| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0631 |
|---|
| Symbol | |
|---|
| ID | 4076118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 668659 |
|---|
| End bp | 671709 |
|---|
| Gene Length | 3051 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005928 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_612626 |
|---|
| Protein GI | 99080472 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.140124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0944668 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTG CACGCGGATC AATTCAACGG CCGCTTTATA CGTGGCTGAT CATGCTGTTT
GCCCTCTTTG GGGGCATCTG GGGCTTTCTC TCGCTGGGTC GATTGGAAGA CCCTGCCTTC
ACCATCAAAC AGGCGGTGAT CCAGACGACT TATGCCGGCG CCAGCGCCGA GCAGGTGGCC
CTGGAGGTGT CCGAACCTCT GGAATCCGCC ATCCAGAAGA TGGAGGAAGT CAAGGAAATC
ACCTCCATGA ACCGCCCCGG CGTATCGATC ATCGAAGTGG AGATGCGCGA CACCTATGAC
GGCTCGGAGT TGCCACAGAT CTGGACCAAA CTGCGCGCAA AGGTGCGTGA TGCGGCCCGT
GGCCTGCCGG ATGGCGTCAG CGAGCCGCTG GTGAACGACA GCTTTGGGGA CGTGTTCGGT
ATCTTCTATG CGGTAACGGC TGAAGGGTTT TCCGACCGCG AGAAATACGA GCTATCGACC
TTCCTGCGCC GCGAGTTGTT GACCGTGGAC GGTGTGGCGG ATGTCGATAT CTCGGGGCTG
CGCAAAGAGA CAATCTATGT CGAACCCGAC ATGCCGATTG CCACCAACCT TGGGGTTTCG
GTCAATGCGA TCGCCAACGC CGTTGCCACT TCGAACTCGG TGACACCGGC GGGAGAGATC
AAGGCCGGAC CGATGAACAC CATTCTGCAA ACTCCCGAAG GCTCGGATTC CGTTTCGGAG
ATTGCGGGTC TGACGGTGGG CGTCGGGGGT GAGACCATCA ACATCATCGA CATCGCAAAT
GTTTGGCGCG GACGAGAGAT CGACCCGTCG CTGATGATCC GCTTTGACGG GGTTGAGGCC
TTTACCCTTG GGGTGTCCGG GATCGCCAAT GAAAACATTG TGGATGTTGG TCATCGCGTG
GACGCCAAGC TGGCGGAGCT GGACAGCGAC ATTCCCTTTG GCGTGGAACT GCATCCGATC
TATCAGCAGC ATATCGTTGT GGAGCAGGCG TCCAATGATT TCCTCGTGAA CCTTGCCATG
TCGGTGGCCA TTGTGATCGT GGTGCTGGCG CTCTTCATGG GGTGGCGCGC GGCCATTGTG
GTCGGGACAA CCCTGCTGCT GACGGTGGTG GGGACGCTCT TCTTCATGGC GCTGTTTTCA
ATCGAGATGG AACGCATCTC GCTTGGGGCG TTGATCATCG CCATGGGCAT GCTCGTCGAT
AACGCCATCG TGGTGGCGGA GGGGATGCAA ATCTCCATGC AAAAAGGCAG ATCCTCGCGT
GAAGCCGCGC AGGAGGCGGC CTCGAAGACC CAGATCCCTC TGTTGGGCGC GACGGTGATT
GGCATCATGG CCTTTGCCGG GATCGGGCTC AGCCCGGACG CCACGGGCGA GTTCATGTTC
TCGCTCTTTG CCGTGATCGG AATTTCGCTT CTGCTGAGCT GGATTCTTGC GCTGACGGTC
ACGCCGCTCT TGGGGCATTA CTTCTTTAAA CGCGGTTCGG GAGACGATCA GGACAGCTAC
AACGGGCTGT TGTTTCGCAG CTACGGCGCT CTGCTGCGCG GCGCACTCAA GGCGCGCTGG
CTTGTGGTGG TCGGCCTGAT TGGCGTGACT GTGATGTGTT TCATGGGGTT TGGCCTCATC
AAGCAGCAGT TCTTTCCGAA CTCCAACACG CCGTTGTTCT ATGTGCACTA CAAGTTGCCA
CAGGGCACCG CGATCGAAGC AACCTCTGCG CATATGGCTG AAATGGAATC CTGGCTGGCT
GCGCGCGATG AGGTGGTATC GACCGCAACC TTCGTGGGGC AGGGGGCGAC CCGCTTCTTG
TTGACCTATG CCGGTCAGAA GGCCAATCCA AGCTACGGGC ATCTGATCAT CCGCACGGAA
AATCTCGAAC AGATCCCGGG CTTGCAGGCG GATCTCGAGG CCTGGGGCAA GGCGCATTTT
CCCGAAGGTG AGTTCCGCAC AGAGCGGCTG GTCTTTGGCC CCGGCGGCGG CGCCCCAGTT
GAGGTGCGTT TCTCTGGTCC GGATCCGGCT GTGCTGCGCC GCCTTGCCAA TGAAGCCAAG
GAACTGCTGG AGACAGAGAG CGATCTGACG CGCGATGTAC GTCACAATTG GCGCGAGCAG
GAGTTGGTGC TCAAACCCGT CTACGCCACG GACCGGGCGC AAACGGCTGG GGTGACGCGA
GAGGCGATCT CGAGCGCGCT GCAGTTCTCG ACCAACGGGG TGACAACGGG GGTGTTCCGC
GAACGCGAAC GCCTGATCCC GATTGTCATG CGCCAGCCGC AGGAAGACCC TTATAACGTG
ATGAACCAGG TGGTGTTTTC GGAGACCTCT GGCAGCTGGA TCCCGCTGGA ACAGATGATC
GATGGCATCT CCTACGAGGT TCAGAACACG CTCGTGCATC GGCGCGACCG CGTCTACACT
ATCACCGTGG GGGCGGATGT ATTGCCGGAT GTGACGGCTG CCACCGCCTT TGGCGAGGTG
CAGGCCGCGA TCGAGGCCAT CGAGGTGCCG GTCGGCTACA AGATGGAATG GGGCGGGGAG
CATGAGAACT CCTCGGAGGC CAATGCAAGT CTCGGCAAGC AATTGCCGCT CTCGCTGCTG
ATCATGGTGC TGATCTCCGT TCTGCTCTTC AATGCGATCC GTCAGCCGAT CATTATCTGG
CTGCTGGTCC CGATGAGCGT GAACGGGGTT GTGATCGGTC TCTTGGGCAC GGGGCTTCCC
TTTACGTTCA CAGCACTTCT TGGTCTGCTG AGCCTGTCCG GCATGCTGAT CAAGAACGGG
ATCGTTCTGG TGGAAGAAAT CGACATTGTC CGCCGCGAAG AGGGGCTGCC GCTGCGCGAG
AGCATCGTGA AGGCCTCTGT GTCGCGTTTG CGTCCCGTGA TGCTTGCGGC GATTACGACC
ATCCTCGGTA TGGCCCCGCT TATGAGCGAT GCCTTCTTCG TGTCGATGGC GGTGACGATC
ATGGGCGGTC TGGCCTTTGC AACAGTGCTG ACGCTTGTTG CGGCGCCGGT GTTCTACCTG
ATCTTTTTCA AAGGGGTGGA ACGGCAGGAG CAGAAGGCAG CCGCCGCCTA G
|
|---|
| Protein sequence | MDIARGSIQR PLYTWLIMLF ALFGGIWGFL SLGRLEDPAF TIKQAVIQTT YAGASAEQVA
LEVSEPLESA IQKMEEVKEI TSMNRPGVSI IEVEMRDTYD GSELPQIWTK LRAKVRDAAR
GLPDGVSEPL VNDSFGDVFG IFYAVTAEGF SDREKYELST FLRRELLTVD GVADVDISGL
RKETIYVEPD MPIATNLGVS VNAIANAVAT SNSVTPAGEI KAGPMNTILQ TPEGSDSVSE
IAGLTVGVGG ETINIIDIAN VWRGREIDPS LMIRFDGVEA FTLGVSGIAN ENIVDVGHRV
DAKLAELDSD IPFGVELHPI YQQHIVVEQA SNDFLVNLAM SVAIVIVVLA LFMGWRAAIV
VGTTLLLTVV GTLFFMALFS IEMERISLGA LIIAMGMLVD NAIVVAEGMQ ISMQKGRSSR
EAAQEAASKT QIPLLGATVI GIMAFAGIGL SPDATGEFMF SLFAVIGISL LLSWILALTV
TPLLGHYFFK RGSGDDQDSY NGLLFRSYGA LLRGALKARW LVVVGLIGVT VMCFMGFGLI
KQQFFPNSNT PLFYVHYKLP QGTAIEATSA HMAEMESWLA ARDEVVSTAT FVGQGATRFL
LTYAGQKANP SYGHLIIRTE NLEQIPGLQA DLEAWGKAHF PEGEFRTERL VFGPGGGAPV
EVRFSGPDPA VLRRLANEAK ELLETESDLT RDVRHNWREQ ELVLKPVYAT DRAQTAGVTR
EAISSALQFS TNGVTTGVFR ERERLIPIVM RQPQEDPYNV MNQVVFSETS GSWIPLEQMI
DGISYEVQNT LVHRRDRVYT ITVGADVLPD VTAATAFGEV QAAIEAIEVP VGYKMEWGGE
HENSSEANAS LGKQLPLSLL IMVLISVLLF NAIRQPIIIW LLVPMSVNGV VIGLLGTGLP
FTFTALLGLL SLSGMLIKNG IVLVEEIDIV RREEGLPLRE SIVKASVSRL RPVMLAAITT
ILGMAPLMSD AFFVSMAVTI MGGLAFATVL TLVAAPVFYL IFFKGVERQE QKAAAA
|
|---|
| |