| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0539 |
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| Symbol | |
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| ID | 4077186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 571387 |
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| End bp | 572250 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005835 |
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| Product | hypothetical protein |
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| Protein accession | YP_612534 |
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| Protein GI | 99080380 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.221333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCAGG GGGGCGCATT GCGAGATGCC ACCAGCCAAA TCGGGCAAAC GGTCGTCGGA
GAGGCTGTCA GACTTGTAAG TTTCCGGCCT TTGGGAAATC TCGCCAATCA CACATTGCTG
ATGGCCGCGA TTGTGATGAT GCAAAGCAAG CACCCCGATC AATTTGAGAA ATCAAATGAA
ATTCTCGACA CGCTCATGGA GCGCGAGATG CATCATCCGG TCGTGTTGAC CTGGGCAGGC
ATCTGGCATG TGATGCGTGT TCAAAAAGGG CTGTCGGGGG ATCGCCGCAA GAGCACACTG
ATGGCAGAGA ACCTCGCGAA CGCGGCTCTC GCCCAGGACC CCGCCTTTTC GCTGGCGCAT
ACCCTGAAGG GAATGATTGC CAGCTATCTC ACGTTTGACT TCGACAACGC ACAGTACTCC
TATGACAAGG CGCTGCAAGA CAATCCCAAT GAGGCGCTTG CCCTGCTGCT CAAGGGCGCG
ACGCGCGCCA TGCAGAACCG TCCGGATGAG GGCGTGGTGT TGACCGAAGC TGCCCGCAAG
CTCACCCCGC TTGGGCCACA GCGCTATTAT TTTGACTCGC TGGCAGCTGC GGTGAGCCTG
GCGGCGCGCG ACTACAACCG GGCCATTGAG CTCGCGGACC GTTCGCTTGA GGAAAACGAC
TCTTATCCAT CGACCCTGCG CACCAAGGCG ATCGCCTTGC AGATGTCTGG CCGCTCCGAT
GAGGCGCGTC ACGTTGTCGA AAGCCTGATG AAGGTGACGC CGGATTTCTC TCTATCGCGC
TACATGCAGG AACATGCAGC CGGCTTCACC CCCTCTGGCC CGGATTGGGC CAGCGCATTG
CGTGAAGCGG GCGTGCCTGA ATAA
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| Protein sequence | MGQGGALRDA TSQIGQTVVG EAVRLVSFRP LGNLANHTLL MAAIVMMQSK HPDQFEKSNE
ILDTLMEREM HHPVVLTWAG IWHVMRVQKG LSGDRRKSTL MAENLANAAL AQDPAFSLAH
TLKGMIASYL TFDFDNAQYS YDKALQDNPN EALALLLKGA TRAMQNRPDE GVVLTEAARK
LTPLGPQRYY FDSLAAAVSL AARDYNRAIE LADRSLEEND SYPSTLRTKA IALQMSGRSD
EARHVVESLM KVTPDFSLSR YMQEHAAGFT PSGPDWASAL REAGVPE
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