| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0489 |
|---|
| Symbol | |
|---|
| ID | 4078527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 511915 |
|---|
| End bp | 512568 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005785 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612484 |
|---|
| Protein GI | 99080330 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0105565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.158715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTTC GTTCCGTCCC GGGCCAGGCT TCGGTCGCCG AGCAAAGTGA GGGTGGCAAG
CTCTTTGCCC CTTCTGCGGC GCGTAATCTG GAGCCCCTGC TTCAAATCGT ATCCCAGCAT
GCGCCCCAGC GGGGCCGGGC GCTTGAAATC GCCAGTGGCA CCGGCCAGCA CGTGATTGGC
TATGCCCGCG CCTTGCCAGA CATTGCGTGG CATCCCAGCG ACATAGACCC GAGCAGACGC
GCCAGCATTG ATGCCTATGC CAGTGAGGCC GGTCTCACGA ACATCGCACC CGCCGCGGCG
CTGGATGCCA CCACAGAGGG ATGGGGCGCG CTGATCGGAC CCTTTGATCT GATTGTGCTC
TCGAACCTCT TACACCTGAT CAGCAACACC GAAGCCCAAA CCTTGCTGTC AGAAGCGGCC
ACCGCGCTGA CACGCTCTGG ACGTTTGCTG ATTTATGGCC CCTTCTCGCG CGAGGGCCTT
TTGGTGAGCG CAGGTGACAA AGCGTTTCAC ACAGCCCTCA CAGAGCATGA CCCGGACATC
GGCTACAAGA ACGTCGAAAC CGTCTCGATC TGGGCCGCCG AAGCCGGATT GCAGATGGCA
CCGCCAAACC ACATGCCCGC AAACAACCTC TGTCTGGTCT TGACCACTAC ATGA
|
|---|
| Protein sequence | MPFRSVPGQA SVAEQSEGGK LFAPSAARNL EPLLQIVSQH APQRGRALEI ASGTGQHVIG
YARALPDIAW HPSDIDPSRR ASIDAYASEA GLTNIAPAAA LDATTEGWGA LIGPFDLIVL
SNLLHLISNT EAQTLLSEAA TALTRSGRLL IYGPFSREGL LVSAGDKAFH TALTEHDPDI
GYKNVETVSI WAAEAGLQMA PPNHMPANNL CLVLTTT
|
|---|
| |