| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0447 |
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| Symbol | |
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| ID | 4076090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 465297 |
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| End bp | 466481 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005743 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_612442 |
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| Protein GI | 99080288 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.766827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTTA TGTTTGCTGT TTTCAATCGG GCCCGCAAGA TTGCTTTGAC CGCCACCGCA
GTTGTTGCCT CTGCATTTGT CGCCGCCTGT GACCCCGGAG CATTGTCCGG CGGGGGGCCG
ACCATCAACA CCTCCAAACC TGTGCCTGTC GCACTGCTGG TACCGCGCGG TTCGGCACAG
CATGGTGATG GCGTTCTGGC CCAGAGCCTT GAAAATGCAG CCCGCCTCGC GATTGCGGAT
CTGAACGGCG TAGAGGTGGA CCTGCGTGTC TATGACACAG CGGGCAACCC TGAAACCGCC
GCTGCCGTTG CCTCGCAAGC GGTGCAGGAC GGCGCGCGCA TCATTCTTGG TCCGGTCTAT
GCCGAAGCCG CAAATGCCGC AGGGATTGCC GCCGCAAAGC GCGGTGTGAA CGTGCTGGCC
TTCTCCAACA ATGCCTCGAT CGCGGGCGGC AACGTGTTCG TTCTGGGCTC GACCTTTGAG
AACTCCGCCA ACCGCTTGAC CCAATATGCC AAACGCCAGG GCAAGAACTC CATGGTGGTT
GTGTCGGGCA ATAATGCCGC CGGACAGGCC GGGCGTTCTG CCATTCAGCA GGCCGCCGTG
CAGAGTGGCA TGACCATTAC GGGCAACGTC AGCTATGAGC TGTCGCAGCA GGGTGTGATC
AACGCGATCC CGACCATTAG CCAGAATGTG CGTCAGAACA AAGCGGACGT GATGTTCATG
ACCGCGACCA CCGCAGGCGC GCTGCCGCTG TTGTCGCAGC TGTTGCCCGA AGCCGGTGTC
ACGCCAGAAG ACGTGCAGTA CATGGGCCTG ACCCGTTGGG ACATCCCCGC GCAGACGCTT
GAACTGCCCG GAGTTCAGAA CGGCTGGTTC GCCCTGCCCG ACCCACAGAA GTCTGCCTCT
TTCCGTGCAC GTTATCAATC CGCATATGGC GCGGCACCGC ACCCGATCGG TGGTCTGGCC
TATGACGGGA TCGCCGCCAT TGGCGCGCTG GTCAGCTCTG GCAACTCCGG GGCGCTCACC
GGTGCGGCTC TGACACAACC CGCAGGTTTC CAGGGCACAG GGGGTATTTT CCGCCTGCGC
CCGGATGGCA CCAGTGAACG TGGTCTCGCC ATCGCAACGA TCCAGGACAA GAAAGTCGTC
ATCATTGACC CAGCGCCACG AAGCTTCCCC GGAGCCGGTT CCTGA
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| Protein sequence | MRFMFAVFNR ARKIALTATA VVASAFVAAC DPGALSGGGP TINTSKPVPV ALLVPRGSAQ
HGDGVLAQSL ENAARLAIAD LNGVEVDLRV YDTAGNPETA AAVASQAVQD GARIILGPVY
AEAANAAGIA AAKRGVNVLA FSNNASIAGG NVFVLGSTFE NSANRLTQYA KRQGKNSMVV
VSGNNAAGQA GRSAIQQAAV QSGMTITGNV SYELSQQGVI NAIPTISQNV RQNKADVMFM
TATTAGALPL LSQLLPEAGV TPEDVQYMGL TRWDIPAQTL ELPGVQNGWF ALPDPQKSAS
FRARYQSAYG AAPHPIGGLA YDGIAAIGAL VSSGNSGALT GAALTQPAGF QGTGGIFRLR
PDGTSERGLA IATIQDKKVV IIDPAPRSFP GAGS
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