| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0292 |
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| Symbol | |
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| ID | 4077427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 298582 |
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| End bp | 299250 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638005586 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_612287 |
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| Protein GI | 99080133 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.402537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.982934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCTCTG CGCTAAAGCT CATTCTGTTT GATGTCGATG GCACCCTGGT GGACAGCCAG
GGGACCATTG TGGCCTGCAT GAACGAGGCC TTTGAACGCG AGGGGCTTGT GCCCCCGTCG
CATGCGGCGA TCCTCTCGAT TGTGGGGCTG TCGCTGCCGC AGGCGCTGGC GCAACTGGCA
CCGGAGCAAT CGGCGCAGGC ACAGGGTGCG CTCGTAGAGG GCTATAAGCA GGCGTATATG
GCAGCGCGAC AGCGCGAGGG GGCAGCACAT TCGCCGCTCT ATCCCGGTGC GCGCGAGGTG
CTGGACACGC TTCATGCGGT GCCGGAATAC ATCCTTGGTG TGGCCACCGG CAAATCTCAG
CGCGGGTTGG ACGCGCTGAT CGAGGGGCAT GATCTGGGAA TGTTCGTCAC CCGTCAGGTG
GCCGATCACC ACCCCTCCAA ACCGCATCCC TCGATGATCC TCACGGCGAT GTCGGAGACG
GGCATCCCGC CTGCCGACAC GGTGATGATT GGCGACACCA CATTCGACAT GGAGATGGGT
CGCGCCGCCG GGGTCAAGAC CATCGGCGTG GATTGGGGCT ATCACCCGGC TGCGCATCTG
CGCGCCGATC ACATGCTTTC GGACTATCGC GCCCTGCCGG ATCTGCTGCG CCGGATCTGG
TCGGACTGA
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| Protein sequence | MTSALKLILF DVDGTLVDSQ GTIVACMNEA FEREGLVPPS HAAILSIVGL SLPQALAQLA
PEQSAQAQGA LVEGYKQAYM AARQREGAAH SPLYPGAREV LDTLHAVPEY ILGVATGKSQ
RGLDALIEGH DLGMFVTRQV ADHHPSKPHP SMILTAMSET GIPPADTVMI GDTTFDMEMG
RAAGVKTIGV DWGYHPAAHL RADHMLSDYR ALPDLLRRIW SD
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