| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0144 |
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| Symbol | |
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| ID | 4078811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 156843 |
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| End bp | 159035 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005438 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_612139 |
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| Protein GI | 99079985 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00842263 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTACG CTCATTCCGA CAAGACCCTG CCGATGATGG CCGATCGCGC CCCGGAGCGG
CGCGAGAAGC TCGAAGGTGG GAAGAAATTC GTCATGCAGA CGGCCTTTTC TCCGGCAGGC
GACCAGCCCA CCGCAATTGC CGAATTGAGC CAGGGTGTGC TCGATGGAGA GCGCGATCAG
GTATTGCTTG GGGCGACTGG CACCGGCAAG ACCTTCACCA TGGCCAAGGT GATTGAGGAA
ACCCAGCGCC CCGCCATCAT CCTTGCGCCC AACAAAACGC TGGCAGCGCA GCTTTACGGT
GAGTTCAAAG GGTTCTTTCC TGACAACGCG GTCGAGTATT TCGTCTCATT CTACGATTAC
TATCAGCCCG AGGCCTATGT GCCACGTTCG GACACCTACA TCGAGAAAGA AAGCCAGATC
AACGAGCAGA TAGACCGGAT GCGGCATTCG GCTACGCGGG CCCTGCTGGA GCGCGACGAT
GTGATCATCA TCGCCTCGGT GTCCTGTATC TACGGTATCG GTTCGGTGGA GACCTATTCC
GCGATGACGC AGGATCTGAT TGTCGGGCAG GACTATGACC AGCGCCAGAT CATGGCGGAT
CTGGTGGCGC AGCAGTACAA ACGCAACGAT CAGGCGTTTC AACGTGGCGC GTTCCGGGTG
CGCGGCGACA CGCTGGAGAT TTTCCCCGCT CACCTTGAGG ACCGGGCTTG GAAGCTGTCG
TTTTTTGGCG AGGAACTGGA GTCGATCACC GAGTTTGACC CGCTCACCGG CGAGCGTACC
GGGAGCTTTG AGAAAATCCG CGTCTACGCG AATTCGCACT ATGTGACACC AAAGCCGACG
CTCAATCAGG CGGTGATTTC GATCAAGAAC GAGCTGCGCC AGCGGCTCGA CAATCTGGTG
AGCGAAGGCA AGCTTCTGGA AGCGCAGCGG CTGGAGCAGA GGACCAATTT CGACATCGAG
ATGCTGGAGG CCACCGGGCA TTGCAATGGG ATCGAGAACT ACTCGCGCTA TCTGACGGGA
CGCGCGCCGG GAGAGCCACC GCCAACCCTG TTTGAATTCA TCCCCGACAA CGCCATCGTG
TTTGCGGACG AGAGCCACGT CTCCGTGCCG CAGATTGGCG GCATGTACAA AGGCGACCAC
CGCCGCAAGA TGACGCTCGC AGAGCATGGT TTCCGTTTGC CGTCCTGCAT GGACAACCGG
CCTTTGAAGT TCGAAGAATG GGACGCGATG CGCCCGCAGT CGGTCTTTGT ATCGGCCACG
CCTGCCGCAT GGGAAATGGA GCAATCCGGC GGCGTGTTTG CGGAGCAAGT CATCCGACCA
ACCGGCCTAC TCGATCCAGA GGTCGAGATC CGTCCGGTGG GGATGCAGGT GGATGACCTC
CTCGATGAAA TCCGCGATGT CACCGCGCGG GGATACCGGA CGCTGGCCAC AGTTTTGACC
AAACGCATGG CAGAAGATCT CACAGAGTAT CTGCACGAAC AGGGTATCAA GGTGCGCTAT
ATGCACTCGG ATATCGACAC CATCGAGCGC ATCGAGATCC TGCGCGATCT CCGGCTTGGG
GCCTTTGACG TTCTTGTGGG GATCAACCTG CTGCGCGAGG GGCTCGATAT TCCCGAGTGT
GGATTGGTGG CCATTCTGGA TGCGGACAAG GAGGGCTTCC TGCGCTCTGA AACCTCGCTC
ATCCAGACCA TCGGTCGGGC GGCGCGAAAC TCCGAGGGCA AGGTCATCAT GTACGCGGAT
CGTATCACCG GCTCGATGGA GCGCGCGATC GCTGAAACCA ACCGCCGTCG TGAAAAGCAG
ATCGCCTACA ACGAAGAACA CGGTATCACG CCGGAGACGG TGAAGAAGAA TGTCGATGAC
GTTCTGGCCG GGCTCTATGA GGGCGACACG GACATGTCCC GGGTCACCGC CACCATCGAC
AAACCCTTGC ATGGTGCCAA TTTCGAGGCT CATCTTGATG GTCTGCGCGA GCAGATGCGC
AAGGCGGCAG AGAACCTCGA ATTCGAGGAA GCCGCACGCC TGCGCGATGA GGTCAAGCGT
TTGGAGGCGG TGGATCTGGC GATTGCGGAC GACCCGCTGG CGCGCCAGTC TGCTGTCGAA
GCCGCCGCCG AAGAAGCGAC CCGCACGCGC GGTCGCTCCA CCGCGGGCAA GGCCGGACAG
CGTGGCGGCA ACGTAAAGCG CCGGGGGCGG TAA
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| Protein sequence | MPYAHSDKTL PMMADRAPER REKLEGGKKF VMQTAFSPAG DQPTAIAELS QGVLDGERDQ
VLLGATGTGK TFTMAKVIEE TQRPAIILAP NKTLAAQLYG EFKGFFPDNA VEYFVSFYDY
YQPEAYVPRS DTYIEKESQI NEQIDRMRHS ATRALLERDD VIIIASVSCI YGIGSVETYS
AMTQDLIVGQ DYDQRQIMAD LVAQQYKRND QAFQRGAFRV RGDTLEIFPA HLEDRAWKLS
FFGEELESIT EFDPLTGERT GSFEKIRVYA NSHYVTPKPT LNQAVISIKN ELRQRLDNLV
SEGKLLEAQR LEQRTNFDIE MLEATGHCNG IENYSRYLTG RAPGEPPPTL FEFIPDNAIV
FADESHVSVP QIGGMYKGDH RRKMTLAEHG FRLPSCMDNR PLKFEEWDAM RPQSVFVSAT
PAAWEMEQSG GVFAEQVIRP TGLLDPEVEI RPVGMQVDDL LDEIRDVTAR GYRTLATVLT
KRMAEDLTEY LHEQGIKVRY MHSDIDTIER IEILRDLRLG AFDVLVGINL LREGLDIPEC
GLVAILDADK EGFLRSETSL IQTIGRAARN SEGKVIMYAD RITGSMERAI AETNRRREKQ
IAYNEEHGIT PETVKKNVDD VLAGLYEGDT DMSRVTATID KPLHGANFEA HLDGLREQMR
KAAENLEFEE AARLRDEVKR LEAVDLAIAD DPLARQSAVE AAAEEATRTR GRSTAGKAGQ
RGGNVKRRGR
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