| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1798 |
|---|
| Symbol | |
|---|
| ID | 8807570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 1914735 |
|---|
| End bp | 1916477 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | Xanthine/uracil/vitamin C permease |
|---|
| Protein accession | YP_003461025 |
|---|
| Protein GI | 289208959 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0000426029 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT CCTCGCAATC GAAGATTCTC TACGAGGTGG ATGACCGTCC GCCGATCGGG
AAATGCGCGC TCAGCGCCCT TCAGAGTCTG ATCCTGGTCG CCCCGACCAT TATCCTCGCG
CCCCTGATTC TGGCGCGCAC CATCGGCCTC GACCTGGCCG CCACCCAGTG GACCGTCTTT
GCCGCACTCA TCGGCAGTGC GCTCGCCACG CTGGTCCAGG TTCGTCGCGT CGGGCCGGTC
GGTTCGGGCT ACCTGATCTT CATGGGCACC TCGACCGCGT ATCTGGCCGT CGGCATCGAG
GCGGCCATGG TCGGCGGCAT GGCGCTGGTC GCGACGCTGG CCATCCTGTC CGCACCCGCA
CAGTTACTGT TCGCCCGCTA CCTGGGCCTG TTCCGGCGCA TCATAACGCC GACCGTCAGC
GGGGTCGTGA TCATGCTGCT GGTGCTGACC GTGATCCCGT CCACGGCCGA CATGATGCAT
GGAGAAGGCG AGTACGAGGG CACCTGGCGC GCCCTGGTCG TCGCCCTGTT TACGCTCGGG
TTCACCATCC TGCTGGCGAT CTTCGGCGGT CGCATGCTGC GCCTTTGGGC ACCCATCATC
GGGCTCGGGG TCGGCGTCGC GGTGGCGGTT GCATTCAACG TCACGGACTT TTCCAGGGTC
GCGGACGCCG CCTGGCTGGG TCTGCCGCCA CTGGAATGGC CGGGCTTCAA CTTCGAGTTC
TCGACCGCCT GGTTCACACT ACTTCTGACC TTCATCATCG TCACGCTGGT CGGATCGGTC
GAGTCGGTGG GCGACACCAT GGTCGCGCAA CGCAACTCCC ACCGGATCCC GCGCAAGGTT
GATTACGACC GCGTGCGCGG CGGCCTCTAT GCGGACGGGG TCGGCAACAT GATCGCCGGC
GGCCTGGGTA CGCTGCCAAA CACCACCTAC GGGATCGGCG TGTCCTCGAT CGAGCTGACC
GGCATGGCTG CGCGGCGCGT CGGCTACTAC TTCGCCGGCT TCCTCGCCCT GGTCGCACTC
ATCCCCAAAC TCAAAATGGT GATGATCTCG CTCCCCGGCC CGGTCTTTGG AGCCTTCCTG
CTGATCCTTC TGGCGCTGCT GTTCGTGGCC GGCATTCGCC TGTGCGCACA GGACGGCCTG
AGCTACCAGA GCGGGCTGAT CATCGGCGTG GCGTTCTCCA CCGGCTTCCT GTTCCAGAAC
CAGTTGTTCT TCCATCACTT GATCCCGGAC GCGCTGGGGC CGTTCATGAA CAACAGCGTG
ACCACCGGCG GCACCGTCGC GGTCGCCATC AGCCTGATCT TCAACCTGCG CCCGCGCCCA
CGACGCCACA GCACCTTCGC GCCCGAGGCC GAATCCCTGC CGCAGATCCA GGCCATGGCG
CGGGAGTTCG GCGAGAGCCT GAGTCTGCCG GAGAAGCAGT CCGTCAAGCT GCAGGTGGCC
CTGGAAGAGG TGTTCATGCA CCTGTCCGAA CAAGCCGCCA GCGAGCCGGG GCGCAGCCGC
CCGGTGGATG TCCGTCTGGA ACGCGAGGGC GAACACCTCG CGGTGGAGAT GATCGACCGC
AGTGCGGCGG CCGAAGTCGA CGAGGCCTCG CTGCGCAAGG CCCGGCAATG GGGTCACAAC
GACGAGCAGT CCCTGCGCGA ACTGGGGCTG TACCTGCTGA ATAGCCTCGC ACAGGATGTG
CGACACCTGC GCATGGCCGG GGTCAACTAC ATCTCGTTCG GTATCCCGCT GCGCCCGATG
TAA
|
|---|
| Protein sequence | MTESSQSKIL YEVDDRPPIG KCALSALQSL ILVAPTIILA PLILARTIGL DLAATQWTVF
AALIGSALAT LVQVRRVGPV GSGYLIFMGT STAYLAVGIE AAMVGGMALV ATLAILSAPA
QLLFARYLGL FRRIITPTVS GVVIMLLVLT VIPSTADMMH GEGEYEGTWR ALVVALFTLG
FTILLAIFGG RMLRLWAPII GLGVGVAVAV AFNVTDFSRV ADAAWLGLPP LEWPGFNFEF
STAWFTLLLT FIIVTLVGSV ESVGDTMVAQ RNSHRIPRKV DYDRVRGGLY ADGVGNMIAG
GLGTLPNTTY GIGVSSIELT GMAARRVGYY FAGFLALVAL IPKLKMVMIS LPGPVFGAFL
LILLALLFVA GIRLCAQDGL SYQSGLIIGV AFSTGFLFQN QLFFHHLIPD ALGPFMNNSV
TTGGTVAVAI SLIFNLRPRP RRHSTFAPEA ESLPQIQAMA REFGESLSLP EKQSVKLQVA
LEEVFMHLSE QAASEPGRSR PVDVRLEREG EHLAVEMIDR SAAAEVDEAS LRKARQWGHN
DEQSLRELGL YLLNSLAQDV RHLRMAGVNY ISFGIPLRPM
|
|---|
| |