| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0680 |
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| Symbol | |
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| ID | 8806429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | + |
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| Start bp | 725026 |
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| End bp | 728931 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003459931 |
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| Protein GI | 289207865 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.344906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0177864 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTAC TCGTGGTCGA AGACCAGGCG GCCGATGCCG ATCTGCAGCG CCGTTCCATC
GAGCGCGGCG TCCCTTCGGC TCAGGTCGCC GTGGCGGACA CCCTCGCAGG GGCGCGCGAA
GCACTGGCAG ACCAGACGTT CGATTGTGTG CTGGTGGACC TGCGTCTGCC GGATGGCAAC
GGGCTGGATC TGGTGGCCGA GCTGCGCGAC CAGGGGCGCC CCGAGGCGGT GATCGTCCTG
ACCGGGCATG GCGAGCAGGA GACGGTCATC GCGGCCTTCC GCTCCGGGGC GGACGACTAC
CTGACCAAGG CCGAAGGGTA TCTCGAACGG CTTCCCGCGC GGATCGTCGA TGCGCGGTCG
TACCGAAATC TGCGTGTGGC GGACGCGCGC GAGCCGCTGG CGGTCCTGTA TGTCGAGCAC
AACGAGTTCG ATATCGGCCT GGCGCGTCGC GAGCTGGCGC GGCGCGCCCC GAATATCCAC
CTCACGGTGC AACGTACGGC GGAGGCCGCC CTGGAGGTCC TGCCGAGTTC GCCGGAGGAA
CCCCTGGCGC TGGACCTGCT GCTGGTCGAC TATCGTCTGC CCGCGATGGA TGGTCTGGAG
CTGGCGCGTA TCGTCCGCCA TGAACGCGGA CTGGATCTGC CCGTCGTGCT GCTGACCGGG
CAGGGCACCG AGGAGCTGGC CGCCCGGGCC CTGCGTATGG GCGTGGACGA TTACGTGCTG
AAAAGCGAGG GGTACCTCAA GGGCCTGCCC GCCGTACTCG ACCAGGTCCA TGTACACGCC
CGCCTGCGCC GCGAGCGTGC CGCCCTGGCG GCGAGTGAGC GCCGCTACCG CGAGGTGATT
GATCAGGCGG GCAATGTCTT TTTTCATCTG GATCAGCAGG GGCGCTGGGT CTTTGCCAAT
CCCGCCTGGT CCGAAATCAC CGGGTTTGTG CTGGAACAGA CCCTCGGGCG GCCGCTGGTC
GATTTCGTGG TGGCGGAAGA CCGGGGACGC GTCGGCGAGC TTGTTCGCGA GGTACTGGAG
ACCGGCGAGA CACGCGGCAT TGGCGAGGTG CGTCTGCAAA GTCGTGAAGG TGGGATTCGC
TGGTGCGAAC TGCGACTGCG CGCCCGGCAG TCCGAGCGGG ACCAGCGGCC TTTCACCGGG
ACCCTGATTG ACGTTACCGA ACGCGTGCGC AACCAGCGTA TTCAGGAGAT CCGGGCGAAC
ATCCTGGACC GGATCGCCAC GGGCGAGCGT GATCCCGCAC TGCTGGAGGA TCTGGTGCTG
GGGCTGGAGT CCCTGAATCC GGACCTGCAT GGCTGTGTGA TGCTGGTGGA CGCAGATGGA
GACCAACTGG TGGGCGCGGC CGGCCCGCGC ATACCGGAGG CCCTGCGGTC GGTGACCAGC
CCGATTCCGG TGGCCGACGG GGTCGGGTCC TGTGGTACGG CGGCCTGGTC CGGCCAGCCG
GTGCTGGTCG AGGATACGCA GTCACACCCC TACTGGTCCG GGCTGGAAGA GGCGACGGCG
CAGGCCGGGT TTCGAGCCTG CTGGTCGTTC CCCTTTCGCG ACGCTGACGG ACATGTGCTG
GGGACGTTTG CGGTCTACCT GGCTGATGCG CGACTGCCGC GTCCGGAGGA ACGCGAGCAG
CTCGAGGAGT TCGCGCGTCT GGCGGCACTG GCGGTGCAGA AACTGCGCGC CTGGCAGGCG
CTGGAACAGC GCGAGCGGTC ACTGGAGGCG GCTGCGGGCC TGAGCCTGAA CCTGCTGCGC
AATGAAAACC CGGCCATTGT GATGAATCGC TTGCTGGGCG AGCTGGGGCG GGTCACGGGC
GCTGATCGCA CTTACGTGCT GATGGATGCC GGGCCTGATT CCGAGCGTGA GACCCTGGAG
CAGCACCGGT TCTTCTGGGT AAACCCCGAG GGGGAGCCTC CGATCCGTCC ACCCAGCCTG
CGCCACCTGA GCCTCGAGTC CGTGCTGCCA CACTGGGATG AACGCCTGCG GGCGGGGGAG
GTGATCCAGA CCCGGATCGC TGACTTGCCG GATGGCGAGA GGGAACTGTT CGAGTCGGTC
CAGACCCGCG CGCTGCTCCT GGCGCCGTTG TACGTGCGCG GGGAGTATCG GGGGTTCGTC
GGGCTGGACC GGGTGCGCCA GGGACGGACC TGGGGTGCGG CGGACGAGCA CATGGCCCGT
ATCGTCGCTG CGAACCTCGG GGCTGCGCTG GAACGCCGGC GTGCGCTGAC GGGGCTGCGC
CGTCTGGCGG CCGTGTTCCA GAGTACCCGC GACGGGATCC TGATCACTGA CCTGTCGGCC
CGCATCGTCG CGGTCAATCC CGCGTTTACC GAGATTAGCG GCTTTTCCGA GCACGACGCC
CTGGGCCGAA ACCCGCGGTT CCTGAAGTCG GGGCGGCACG ACGCCGAGTT CTACCGCGAG
ATGTGGGCGA CCCTGGGGGC CACCGGGCAC TGGCAGGGCG AGGTCTGGAA TCGCCGGTAC
ACCGGCGAGA CCCATCCGCA GTGGCTGAGT CTGGATGTGG TGCGTGACGA GGGGGGCGAG
CCGCAGTACT ACGCGGGGGT GCTGACGGAC CTGTCCGCGC TCAAGCGCTC TCAGAACGAG
CTGGAGTATC TCGCCCAGCA TGACTCGCTG ACCGATCTGC CCAACCGCAG CCAGTTGCAG
ACATTGCTGG GGCGAGCGCT CGAGCGGGCG CGTGCGGAGC GCCGCGGTCT GGCCGTTCTC
TGTCTGGACC TGGACCGGTT CAAGACCCTG AACGACAGCC TCGGGCATTC GGTCGGCGAC
CGGGTGTTGC TGGAGGTCGC GCGGCGCCTG GCCGATGTGC TGGAAAGCCC GGACCTGCTC
GGACGGCTGG GCGGGGACGA GTTTCTAGCC GTCCTCGAGT CCGCCGACAC GCACGAATTG
GCAGAGGAAA GAGCCCGGGC ACTGCTTGAG GTGCTGCAGC GCCCCTTCGT TCTGGACGAT
GGGCAGGTGG TTTATGTCAA CGCCAGTATC GGCGTCAGCC GCTTCCCGGC GGATGGCGAT
ACGGTGGTGG ATCTCATACA GCATGCCGAC GCGGCGATGT ACCACGCCAA GGCACTGGGC
CGCGAGACCT GGAGTTTCTA TACCGAGGAT CTGACCCAGG CGGCGGCCGA GCGGCTGGAT
CTGGAGAACC GCCTGCGTCA TGCCCTGAAC CAGGAGAATG ACGAGCTGGC GGTGCATTTT
CAGCCGCAGG TCCGGCTGGT CGATGGCCGA TTCACGGGGG TGGAGGCCCT GGTGCGCTGG
CGTACCGGGT CGGGCGAGAG TATCCGTCCG GATCGCTTTA TTCCGATCGC GGAGGAGACA
GGGCTGGTGG TCCCGCTTGG CGAATGGGTG CTGCGCGAGG CCTGCCGCCA GGGTCGCGAA
CTGCTCGACC AGGTGAGTCC GGACCTGGTG ATGTCGGTCA ATCTGTCCCC GGTGCAGTTG
CGGCGCGGCA ACCTGGTGGA ACAGGTGCGT GCGATACTTG GGGAGACAGG GTTTCCTGCT
CGTCAGCTGG AGTTCGAGAT CACCGAGACC GGTCTGATGC AGCAGGGGGA TCAGGCCGTC
ACGCGACTCA AGGCATTGAA GTCGCTGGGC GTGCGGGTGG CCATCGATGA CTTTGGTACC
GGGTATTCGT CGCTCGCCGT GCTGCAGACC TTCCCGCTGG ATGTGCTGAA GATTGACCGC
AGTTTCGTCG ACGGTGTGGA TCGGATGGAC GAAGAGGGGA CCGATCGGCT GATTGCATCC
ACCATCATCG CGATGGCGCG CAACCTGCAG CTGGAGGTCA TCGCCGAGGG CGTGGAGAAC
GAGGCGCAGG CCCGCTTTCT AATCGAGCAT GGCTGCGAGT TCGGCCAGGG CTACCTGTAC
AGCCCCGCAC TGCCGCCCGA GCAACTGCTG GAGTGGGCCG CACGGCGAGT GACCTCGCCC
GTTTGA
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| Protein sequence | MHVLVVEDQA ADADLQRRSI ERGVPSAQVA VADTLAGARE ALADQTFDCV LVDLRLPDGN
GLDLVAELRD QGRPEAVIVL TGHGEQETVI AAFRSGADDY LTKAEGYLER LPARIVDARS
YRNLRVADAR EPLAVLYVEH NEFDIGLARR ELARRAPNIH LTVQRTAEAA LEVLPSSPEE
PLALDLLLVD YRLPAMDGLE LARIVRHERG LDLPVVLLTG QGTEELAARA LRMGVDDYVL
KSEGYLKGLP AVLDQVHVHA RLRRERAALA ASERRYREVI DQAGNVFFHL DQQGRWVFAN
PAWSEITGFV LEQTLGRPLV DFVVAEDRGR VGELVREVLE TGETRGIGEV RLQSREGGIR
WCELRLRARQ SERDQRPFTG TLIDVTERVR NQRIQEIRAN ILDRIATGER DPALLEDLVL
GLESLNPDLH GCVMLVDADG DQLVGAAGPR IPEALRSVTS PIPVADGVGS CGTAAWSGQP
VLVEDTQSHP YWSGLEEATA QAGFRACWSF PFRDADGHVL GTFAVYLADA RLPRPEEREQ
LEEFARLAAL AVQKLRAWQA LEQRERSLEA AAGLSLNLLR NENPAIVMNR LLGELGRVTG
ADRTYVLMDA GPDSERETLE QHRFFWVNPE GEPPIRPPSL RHLSLESVLP HWDERLRAGE
VIQTRIADLP DGERELFESV QTRALLLAPL YVRGEYRGFV GLDRVRQGRT WGAADEHMAR
IVAANLGAAL ERRRALTGLR RLAAVFQSTR DGILITDLSA RIVAVNPAFT EISGFSEHDA
LGRNPRFLKS GRHDAEFYRE MWATLGATGH WQGEVWNRRY TGETHPQWLS LDVVRDEGGE
PQYYAGVLTD LSALKRSQNE LEYLAQHDSL TDLPNRSQLQ TLLGRALERA RAERRGLAVL
CLDLDRFKTL NDSLGHSVGD RVLLEVARRL ADVLESPDLL GRLGGDEFLA VLESADTHEL
AEERARALLE VLQRPFVLDD GQVVYVNASI GVSRFPADGD TVVDLIQHAD AAMYHAKALG
RETWSFYTED LTQAAAERLD LENRLRHALN QENDELAVHF QPQVRLVDGR FTGVEALVRW
RTGSGESIRP DRFIPIAEET GLVVPLGEWV LREACRQGRE LLDQVSPDLV MSVNLSPVQL
RRGNLVEQVR AILGETGFPA RQLEFEITET GLMQQGDQAV TRLKALKSLG VRVAIDDFGT
GYSSLAVLQT FPLDVLKIDR SFVDGVDRMD EEGTDRLIAS TIIAMARNLQ LEVIAEGVEN
EAQARFLIEH GCEFGQGYLY SPALPPEQLL EWAARRVTSP V
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