| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2424 |
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| Symbol | rplA |
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| ID | 2739849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 2454127 |
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| End bp | 2454807 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637161315 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | NP_973023 |
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| Protein GI | 42527925 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.551126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACACG GAAAAAATTA CAAAAATGCA CTTGCAAAGT ATGATTCTGC AGCATCCTAC
GAGCTTCCCA AGGCTGTTGA TATTGTCAAA GAGCTTAAAT ACGCCAAATT CGATGAAACA
GTTGAAGTTC ATGTAAGTTT GACCCTTGGT AAGGGACAGA GCGTTAGAGA TACCCTTGTT
CTCCCCCATC AGTTTAGGGG TGAAAAAAAG GTTTTGGTTT TTTGTACGGA CGACAGAGTA
AAAGAAGCTC TTGACGCAGG AGCTGCCTAT GCCGGTTCCA CGGAGTATAT CGAAAAGGTA
AAGGGCGGCT GGCTCGATTT TGATATCGCA GTTGCTACCC CCGATATGAT GAAGGATGTA
GGACGCTTGG GTATGGTACT CGGCCGCAGA GGCTTAATGC CTAACCCCAA GACGGGAACG
GTTACCACGG ATATTGCAAG CGCTATAAAC GAGCTTAAAA AAGGCCGTGT AGAATTCCGC
GCCGATAAGG GCGGAGTTGT TCATCTCCCT GTTGGCAAGG TTTCTATGGA TTCTTCCAAG
ATTGTGGAAA ACGTACAGGC TCTTATCAAC GAAACGATGA GAAAAAAGCC TGCCGATGCA
AAGGGCGACT ATATCAGATC CGTATCGATT AGTTCGACAA TGGGCCCCGG TGTTTGGGTT
GATTATAAGG TAGGAGAGTA A
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| Protein sequence | MKHGKNYKNA LAKYDSAASY ELPKAVDIVK ELKYAKFDET VEVHVSLTLG KGQSVRDTLV
LPHQFRGEKK VLVFCTDDRV KEALDAGAAY AGSTEYIEKV KGGWLDFDIA VATPDMMKDV
GRLGMVLGRR GLMPNPKTGT VTTDIASAIN ELKKGRVEFR ADKGGVVHLP VGKVSMDSSK
IVENVQALIN ETMRKKPADA KGDYIRSVSI SSTMGPGVWV DYKVGE
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