| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1966 |
|---|
| Symbol | htrA-1 |
|---|
| ID | 2741529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1980413 |
|---|
| End bp | 1981690 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637160856 |
|---|
| Product | trypsin domain/PDZ domain-containing protein |
|---|
| Protein accession | NP_972569 |
|---|
| Protein GI | 42527471 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000431561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTT ATAGTAGAAG ACAGACCCTC GTATTTTCGC TCATTGCAGC GGTTATTTTT
GCAAGTGCAG GTTTTTTTGC CGGTATAAAA TATAGTACAG GAAACGCCGG CTCGACTGGA
ATTCAAAGCG GAACCTCAAG CAACCCTGCC GATTTTGAAG AAAGTGCAGA AAACGGATTT
GCTCAGACGG AAAATTCGCA CAATTTAAAT ATGCAGCAGC ATGGAAATAC GGCAGCTTTA
AACACTGCAA ATGAAGCAGG ATACATGGGC TATACTCCTG CCGAATCACA GAATATTCGT
GTATATGAAT CGACCAATGA AGCTGTCGTA AACATAACCA CCGAAACTAT GGGAGCAAAC
TGGTTTTTTG AGCCTGTTCC GGTTGAAGGC AGTTCGGGTT CAGGCTCCAT AATCGACGAA
AGCGGATTGG TACTGACCAA TGCACATGTA ATTTCAGAAG CTTCAAAGAT TTATATTTCT
CTTTCTGACG GAAGTCAGTA CGAGGCAAAA GTAGTAGGAA CGGATGCCGA AAACGATTTG
GCTGTTTTAA AATTTGATCC GCCTAAAAAT ATTAAACTTA CGGTAATAAA ATTAGGAGAC
TCAACCAATT TAAAAGTCGG CCAAAGAGTT TTAGCTATCG GAAACCCTTT CGGATTGGAA
AGAACTCTTA CAGACGGAAT AGTCTCGGCA CTGAAACGCC CGATTCAAAA CGATAAAAAC
ATTATCATCA AAAATATGAT TCAAACCGAT ACGGCAATTA ACCCCGGAAA CTCAGGCGGT
CCTCTTTTAG ACACTCAAGG AAGAATGATA GGAATAAATA CCATGATCTA TTCCACATCG
GGAAGCTCAG CCGGAGTAGG CTTTGCTGTT CCCGTAAATA CGGCTAAAAG AGTTGTTGCA
GATATCTTAA AATACGGAAA GGTTATCCGC GGTTCCATCG ATGCCGATTT GGTTCAAGTT
TCAGGAAGAC TAGCCTCTTA TGCAAAACTC CCCGTTTCTT ACGGTCTCCT TGTTTCCGAA
GTAAAAAAAG GAAGCAATGC GGCAAAGGCC GGCCTTCGCG GAGGAAATGA AGCTGTGCGG
TCAGGAGTGG GCAGATACAG TTCCGTCTTT TACATAGGCG GCGATATCAT TGTCGAAATA
GCCGGACAAA AGATAAATAA CATAACAGAT TATTATTCGG TACTGGAGGA TAAAAAACCC
GGTGAAACGG TAAAGGTTAA AATTGTCAGA GGGAAAAAAC TTGTCGATTT AAGCTTAACC
TTATCGGAAC GAAACTAA
|
|---|
| Protein sequence | MKLYSRRQTL VFSLIAAVIF ASAGFFAGIK YSTGNAGSTG IQSGTSSNPA DFEESAENGF
AQTENSHNLN MQQHGNTAAL NTANEAGYMG YTPAESQNIR VYESTNEAVV NITTETMGAN
WFFEPVPVEG SSGSGSIIDE SGLVLTNAHV ISEASKIYIS LSDGSQYEAK VVGTDAENDL
AVLKFDPPKN IKLTVIKLGD STNLKVGQRV LAIGNPFGLE RTLTDGIVSA LKRPIQNDKN
IIIKNMIQTD TAINPGNSGG PLLDTQGRMI GINTMIYSTS GSSAGVGFAV PVNTAKRVVA
DILKYGKVIR GSIDADLVQV SGRLASYAKL PVSYGLLVSE VKKGSNAAKA GLRGGNEAVR
SGVGRYSSVF YIGGDIIVEI AGQKINNITD YYSVLEDKKP GETVKVKIVR GKKLVDLSLT
LSERN
|
|---|
| |