Gene TDE1943 details

Gene Information

• Locus tag: TDE1943
• Symbol: rpsD
• ID: 2740183
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 1959526
• End bp: 1960146
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637160831
• Product: 30S ribosomal protein S4
• Protein accession: NP_972546
• Protein GI: 42527448
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000165319
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATTA AACAGCCTAA GGGAAAAACA GTTAGACGAC TCGGCGTTAA TATTTACGGC 
AACCCAAAAT ATGACAAACT TTTGGATCGC AAGCCGAATG GTCCCGGAAA AGAACGCGGC 
GCAAGAAAAC GGGGCAAGAC TTCTGTTTAT GGTGAACAAT TAAAGGAAAA ACAAAAATTC 
AGATTTGCTT ATGGAATTTC GGAACGGCAG TTTAGGAATC TATATAAAAA AGCAAGCCGA 
ATGCCCGGTG TTACCGGTGA CAATATGATT TCCTTGATGG AACAGCGTTT GGATAATACG 
ATTTATCGAA TGGGCTTTGC TATCAGCCGT GCACAGGCCA GACAAATGGT CACGCATGCT 
TATTTCTTTA TTAACGGAAA GCCCGTAAAC ATTCCCTCGA TGTGCGTAAG TGTAAACGAT 
GTTATTACAA CAAAAAATAA AAAAGGTATT CAAAACCTTA TCCGTCATAA TATGAGCACT 
TCTCAAAGTG CGAGAGGTTC TTGGCTCACA ATTGATGACG AAAAACTTTC TGCAACGGTA 
AATATTTTAC CTGTTACTAC GGATATTCAG CCCGTAGGAA ATATCCAGAA CGTTGTTGAA 
TACTATTCAA GAAATGCTTA A 

 

Protein sequence

MAIKQPKGKT VRRLGVNIYG NPKYDKLLDR KPNGPGKERG ARKRGKTSVY GEQLKEKQKF 
RFAYGISERQ FRNLYKKASR MPGVTGDNMI SLMEQRLDNT IYRMGFAISR AQARQMVTHA 
YFFINGKPVN IPSMCVSVND VITTKNKKGI QNLIRHNMST SQSARGSWLT IDDEKLSATV 
NILPVTTDIQ PVGNIQNVVE YYSRNA