Gene TDE1910 details

Gene Information

• Locus tag: TDE1910
• Symbol: dxs
• ID: 2740408
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 1926966
• End bp: 1928927
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637160796
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: NP_972513
• Protein GI: 42527415
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.536946
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAAA ACAGCTTATT AAGTAAAATA AAAGGCCCCG AGGATATAAA GCTCCTTTCC 
TATAATGAAC TTAAAGACCT CGCTGTAGAA ATACGAAAAG AAATTCTCAC TGTAGTAGGC 
CATAACGGCG GCCACCTTGC AAGCAATTTG GGTGTAATAG AGCTTACGCT TGCGATTCAC 
AGGGTTTTTT CAAGTCCCCA TGATGCGGTT GTCTGGGATG TAGGTCATCA GTCATATACG 
CATAAAATGA TAACAGGCAG GCAATCCCGC TTTTCTACCT TACGCCTTTG GGAAGGCCTT 
TCAGGTTTTC CAAAAAGAGA AGAAAGTGTT CACGATGCCT TTAATACCGG CCATGCTTCA 
ACTTCAATTT CTGCAGCTCT GGGTATTCTT GAAGGAAAAA GATTAAACAA GGATTCCGGA 
AAGGTTATAG CCGTTATAGG TGACGGTGCT ATGACCGGCG GAATGGCCTT TGAAGCTCTT 
TCAAATGCCG GAGAATTAAA AAAAGATTTA ATAGTTATAA TAAACGACAA TAAAATGTCC 
ATAAGCAAAA ATACGGGGGC TTTTTCCGAG TACTTGAGCC GCCTTACGGT TCATGAAGGC 
TACCAGCGTT TTAAGTACCT CTTTGACAAG GCTGTGGGCT CAATACCCCT TGTAGGAAAC 
AAACTTAATT CCATAATTTG GCGTTTAAAA AGAGGAATGA AGGGGATATT CTACAAGAAT 
AATATCTTTG TTGATTTCGG TTTTGAATAT GTCGGCCCCA TAAACGGCCA CAATATGAGA 
GAACTTGAAA AGGTTTTAAA AAACGTAAAA AAATTAAACA GCCCCGTTGT AATGCTTGTA 
GAAACCATCA AGGGTAAGGG CTATCCTTTG GCGGAAATAA ATCCTGCGGC CTTTCATGGG 
ATCGGGCCCT TTAACATTGC CGATGGAAAG GTAGAAAAAA ATGATGCGAT TACCTTTACG 
CAAGCCTTTG GAAAGGCTTT GGTAAAAGCC GCCGAAAAAA ATTCGAAAAT TGCAGCTATA 
ACGGCAGCAA TGGAATCGGG GACAGGCCTT TCTCTATTTC ATAGCAAATT TCCTGAAAGA 
TTTTTTGACG CAGGTATTGC CGAAGGCCAT GCCGTTACCT TTGCAGCAGG ACTCGCCTCA 
GCAGGAATGA AGCCTGTTAC GGCAATTTAC AGTACCTTTT TACAACGCTC AATCGACCAG 
ATTATACACG ACACTTCAAT ACAAAATTTG CCCGTGATTT TTGCTATAGA CCGTGCAGGT 
CCCGTTCCGG CAGATGGAGA AACCCATCAG GGCCTTTTTG ACATAGCCTT ACTGCGCCCT 
GTTCCCAATA TGACAATTCT TTGTCCTGCA TCCGAAAAAG AGTTGGAGCT GATGCTTTCT 
TGGGCTCTTA TGCAGGATAA TCCCATAGCA ATAAGGTATC CTAAGGCCGA CTGTCCGAAA 
GAAATCCCCG AGTTTTCTCA AAGCATAGAA AAAGGACGCG GTGTACTTAT AAAGAATTCC 
GATAAGAGCC GCATTTTAAT AACCTGTACC GGAGGGATGT ACAATGAAGT TAAAGAGGCT 
TCTGCAATTC TTGCTCATCG AGGCTTATCC ACCGATATTT ATAATGTGAG ATTTGCAAAG 
CCCATAGACG AAAACTACTT TTTAAATATT ACAAAAGACT ACTCATACAT TCTTTTTGTA 
GAAGACGGTA TGAAGATAGG CAGTCTAAGC TCATATTTGG AATCCCTTAT TTTAAGGTAC 
GAAAGCAACA AGACCGGGTC TCAAAGTAAC AAGACCGGGC TGCAAAATAA AAAAACTGCG 
GTATTGGCTT TTGAAGATAT GTTCTTCCCC CATGGTACCC GCTCCGAAAT TTTTAAGGGT 
GCAGGCGTAT CGGCCGAACA CATAGTACAA GCAGCAGAGC TGCTTTTTAC CGAAACTCAT 
ACCGTTTCGG CTTCTACCGC TATTCCGGTA AAGGAGAATT AG 

 

Protein sequence

MTKNSLLSKI KGPEDIKLLS YNELKDLAVE IRKEILTVVG HNGGHLASNL GVIELTLAIH 
RVFSSPHDAV VWDVGHQSYT HKMITGRQSR FSTLRLWEGL SGFPKREESV HDAFNTGHAS 
TSISAALGIL EGKRLNKDSG KVIAVIGDGA MTGGMAFEAL SNAGELKKDL IVIINDNKMS 
ISKNTGAFSE YLSRLTVHEG YQRFKYLFDK AVGSIPLVGN KLNSIIWRLK RGMKGIFYKN 
NIFVDFGFEY VGPINGHNMR ELEKVLKNVK KLNSPVVMLV ETIKGKGYPL AEINPAAFHG 
IGPFNIADGK VEKNDAITFT QAFGKALVKA AEKNSKIAAI TAAMESGTGL SLFHSKFPER 
FFDAGIAEGH AVTFAAGLAS AGMKPVTAIY STFLQRSIDQ IIHDTSIQNL PVIFAIDRAG 
PVPADGETHQ GLFDIALLRP VPNMTILCPA SEKELELMLS WALMQDNPIA IRYPKADCPK 
EIPEFSQSIE KGRGVLIKNS DKSRILITCT GGMYNEVKEA SAILAHRGLS TDIYNVRFAK 
PIDENYFLNI TKDYSYILFV EDGMKIGSLS SYLESLILRY ESNKTGSQSN KTGLQNKKTA 
VLAFEDMFFP HGTRSEIFKG AGVSAEHIVQ AAELLFTETH TVSASTAIPV KEN