Gene TDE1488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1488 
Symbolgap 
ID2739889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1531694 
End bp1532743 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content41% 
IMG OID637160367 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionNP_972094 
Protein GI42526996 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.01242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAG CTATCAACGG ATTCGGAAGA ATCGGAAGAC TTGTTTTTCA AGCCTTGGTA 
AATCAAAACT TGCTTGGAAA AGACAAATTC GATGTTGTTG CGGTTGTTGA CCTTTCAACG 
GATGCAAAGT ATTTTGCCTA TCAACTAAAA TACGATTCGG TTCAAGGCAA GATGGACGCC 
AAAATAGGCA CTGACGGAGA TGATGTCCTT GTAGTAAACG GCCATAAAAT TAAGTGTATA 
TCGGGAAAGG GATTAACTCC CGCACAATTA CCGTGGAAGG AGCTCGGAAT AGATGTTGTA 
ATTGAAAGCA CCGGTATTTA TACAAATGAA AAGGCCTATG AACACCTTGA AGCCGGAGCA 
AAAAAGGTTA TTATCTCCGC TCCCGGAAAA AGTAAGGATC CTGCAAAGCC AATTAAAACA 
TTTGTTATGG GCGTAAACGA AAACGAGTAT AAGGCATCAG AGCATCATGT AGTTTCAAAT 
GCAAGCTGTA CTACAAACTG CCTGGCTCCT GTTGTGCACG TTCTTTTAAA AGAAGGATTC 
GGCATTGAAA CAGGCCTTAT GACAACCATT CACGCCTACA CGGCAACTCA AAAGACGGTA 
GACGGTGTTT CTCTAAAAGA CTGGAGAGGC GGACGGGCTG CAGCCGTAAA TATTATCCCC 
TCAACCACAG GCGCTGCAAA AGCTGTAGGA GAAGTTCTTC CTACTACAAA AGGAAAACTG 
ACAGGTATGT CCTTTAGGGT TCCTACCCCC ACAGGCTCCG TTGTGGACTT AACAATCCGC 
ACAGAAAAAG ATACCTCTAT CGAAGAAATT GATAAGGCAA TAAAAAAAGC CTCGGAAAGC 
TATCTAAAAG GTGTTTTAGC CTATTGTGAT GAAGAAATAG TTTCTACCGA TATTATTCAC 
GATCCTCATT CTTCAATCTA TGACAGCAAG GCAACTTTAC AAAACAACCT TCCAGGTGAA 
AAGAGATTCT TTAAACTTGT TTCATGGTAT GATAATGAGT GGGGTTATTC CAATAGAGTA 
ATCGATCTGC TTAAATTTAT AACAAAGTAA
 
Protein sequence
MKVAINGFGR IGRLVFQALV NQNLLGKDKF DVVAVVDLST DAKYFAYQLK YDSVQGKMDA 
KIGTDGDDVL VVNGHKIKCI SGKGLTPAQL PWKELGIDVV IESTGIYTNE KAYEHLEAGA 
KKVIISAPGK SKDPAKPIKT FVMGVNENEY KASEHHVVSN ASCTTNCLAP VVHVLLKEGF 
GIETGLMTTI HAYTATQKTV DGVSLKDWRG GRAAAVNIIP STTGAAKAVG EVLPTTKGKL 
TGMSFRVPTP TGSVVDLTIR TEKDTSIEEI DKAIKKASES YLKGVLAYCD EEIVSTDIIH 
DPHSSIYDSK ATLQNNLPGE KRFFKLVSWY DNEWGYSNRV IDLLKFITK