Gene TDE1244 details

Gene Information

• Locus tag: TDE1244
• ID: 2741420
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1275963
• End bp: 1277939
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637160122
• Product: TPR domain-containing protein
• Protein accession: NP_971851
• Protein GI: 42526753
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5010] Flp pilus assembly protein TadD, contains TPR repeats

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGC CTTTTTTCGG ATTTATGTTT ATTGCTTTAT TTTCGGCCTC TTTATTCTGC 
AACCCTGCAG ACTTGTATCA AAAAGGTGCC GAATATCAGG CTAATGAAGA TTGGTACGGG 
GCTATTGAAA TGTACCAATC CGCTTTAAAG GAAAACCCTT CCTATAATTT GGTATATCAG 
GGCTTAGCCG AATGCTTTTA TGCTCTTGAC GAATATGACC AAGCCTTATC CTTTGTAGAG 
TCAGCCCGAA AATATAAAAA AGATGATCCC GATTTGCAAA ACCTCCACGG CTTTATTTTG 
GTCGGCCTTG GAAAGATAGA TGCGGCAAAG ACCCTTTTTA ATGGGGTTTT AAAAAAATAT 
CCCAACAATC CCGAAGCTCG TTTCGGTTTG GCTGAAATAG AGGTTTCCCA AGGAAAGCTC 
TATCTTGCTT CCGAGATGTA TAAGCAAAAC CTTCAGCGTC AGGGCGAAAA CAGAAAGGAT 
CTTCTTTCTT TAGCCCTCGT AAGCTATGAG GCCGGAAATG TTAAGCAGGC CGAAGATTAC 
ATAAACAGAG CCTTAAAATA CCATGGCGAT AATCCTCAGG TTCATTATTT TGCGGCCTAT 
TTACATTCTC TTGACGGAAA ACTTGAAGAG GCCGAAGGAC GTATTTATTC GGCTCTTAAA 
TTAAAAGAAG ATTATGATGA GGCCTATGCC CTGCTTGCTT CCGTCTTATA TGCACAAAAG 
CGTTATGAAG AAGTTATAAA GATTTCCGAT ATGCGGATTT CAAAAAAAAG AGACAGGGCA 
GATGCTTGGT ACTTAAAAAC TTTGAGTTTA AGGCAGCTTG CAAGATACGG TGAGGCCATA 
AATGCTGCTA AGGTAGGGCT TTCCTTGGAT GCCGACGATG AAATAATGCG CTGCCTTTTA 
GAAGAGCTTG CCATAGAAAA TTTGAATTTT GAAGATTCTT TCCGTATGGA GCTTTCAAAA 
TACCACGCAC AAAAAGCTCT CGGATTTTTC CGCCGAAATA TGACTGAGCA AGCCCTCTAT 
GAGTACAGGC GAACCTTGAA GATATATCCT TATGATGTTG AAAGCAGGGA AGCCTATGCC 
GGTATTTTGC TCCGTCTCGG TTATCCCGAA AGATATTTGG AACAAATGCT TTTTATTCAG 
TCCATAGTAA AGAGCAATAC AAAGGTAAAT GATGCGGTTG AAGCTTATGA AAAACATCTT 
TTAAGTTCCA TCCAATCAAA ATGGCGTATA GATCCCCTTT ATTTGGATAA GGCCCACATA 
TCCATAGGTT TATTTTATAC CATGGAAAGC TCAAACGTTT TGCATCCTGA AGCCGAGCGT 
ATAACTCAAA TTCTTACCTC GGATATTTTT TCTTATAATC CCAGAATCAA AATAACTTCT 
TATTCGGATA AGCCTGTAAC TTACAGGGAG GCTTCGAAAA AATCGCGTAC GGCAAATGAG 
GACTATTTCG GCATTATAAG GCTCAAAGAG AATAGGAGGG ATATTCAAAT CATATTGGAG 
CTTTATGTTT CGCGTACCGG TTCTCCCGCA AAAACATTTA CCGTTTACCG CTCAGGAAAT 
GACCGTTTTT CAAACGGTAT AAGACGGCTT TCTTCAATGC TTAATGAGGC AATGCCCATC 
GTAGGCAAGC TCATAAACCG CTATCAAAAT GAAGCCGTTA TCGACATAGG AAAACATGAT 
TCGGATTTTA AGGATTTAAA AATTGCCGTT ATACGCAAGG ACCGCTTGGT TATCGAAAAA 
GAAGGTCTGG GTATGGTCTT TGATCCGTCC GATCTTTTGG GTTATTTTGA GCCTTCAAAG 
TCGGAGGAGA ATTTGTCCGA GGGAATTTTA AAGAGAAACG GTTACTATGA TAGAATGAAT 
GCAGGTGATT CAATAATTCT TGTTAGCGAA AATGCAAAAG AAAAAGCTGC GGAGGATTAT 
ACGAATTCCT ATCAAAAAAA TTCTTTATTG CTTTTACTTC TTAGGAGAAT TCGCTAG 

 

Protein sequence

MKKPFFGFMF IALFSASLFC NPADLYQKGA EYQANEDWYG AIEMYQSALK ENPSYNLVYQ 
GLAECFYALD EYDQALSFVE SARKYKKDDP DLQNLHGFIL VGLGKIDAAK TLFNGVLKKY 
PNNPEARFGL AEIEVSQGKL YLASEMYKQN LQRQGENRKD LLSLALVSYE AGNVKQAEDY 
INRALKYHGD NPQVHYFAAY LHSLDGKLEE AEGRIYSALK LKEDYDEAYA LLASVLYAQK 
RYEEVIKISD MRISKKRDRA DAWYLKTLSL RQLARYGEAI NAAKVGLSLD ADDEIMRCLL 
EELAIENLNF EDSFRMELSK YHAQKALGFF RRNMTEQALY EYRRTLKIYP YDVESREAYA 
GILLRLGYPE RYLEQMLFIQ SIVKSNTKVN DAVEAYEKHL LSSIQSKWRI DPLYLDKAHI 
SIGLFYTMES SNVLHPEAER ITQILTSDIF SYNPRIKITS YSDKPVTYRE ASKKSRTANE 
DYFGIIRLKE NRRDIQIILE LYVSRTGSPA KTFTVYRSGN DRFSNGIRRL SSMLNEAMPI 
VGKLINRYQN EAVIDIGKHD SDFKDLKIAV IRKDRLVIEK EGLGMVFDPS DLLGYFEPSK 
SEENLSEGIL KRNGYYDRMN AGDSIILVSE NAKEKAAEDY TNSYQKNSLL LLLLRRIR