Gene TDE1019 details

Gene Information

• Locus tag: TDE1019
• ID: 2740999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 1049792
• End bp: 1051639
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637159892
• Product: dicarboxylate transporter, DctM subunit, putative
• Protein accession: NP_971627
• Protein GI: 42526529
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGT TAGTTAATGG TTTTATTTTA GCTCTTACGG CAGTACTAAT TGTACTGCCT 
TTTGTAAGCC ATATACTTGC AAGTTTAGGT GGAAATAGTT TAGAGTATGA GCGGTTGATT 
GTTCAGCTGG TCTTTGTTTT TGCCTGTCTT GCAGGTCTTA TCACAACAAT AGAAAAAAAA 
CAACTGAATA TAGAAGTTTT TACTTCCAAA TTGAATAAAA AGCATCAATC AATTGTACAT 
GTGACTTTAT CCTGCGTAAA TACAGCAATC CTTACAGCTA TATTTTTATC CGTATTTCCA 
AACTACAATA TGCTCTCTTC AGAAGATCAT GTTTTGTATA TTCCGATAAA AATTTTCTTC 
TCTGCACTCC CTCCGATGTA CCTGATAATG CTTGCATTGG AAATAAAGAG AAACAAGTGC 
ATAATTTCAA ACATAGCAGG TCTTCTAATA GGGCTGTTAA TAAGTACGGG CTCTATTTTG 
GGACTCTTAA ATTTGGTATT CGGTTCATGG TACCCTGAAA TAAACGATTC AGGTCTCGCA 
GTTCTTTTAA GCGGTATTTC CACCTCCGTG CAAATTTTTT CTGAAAATGC TATTTGGCTG 
ATTGTATTAA TTTTTACCGT ATTCAGCCTT TTCGGTATGC CTCTTTATAT TGTACTTTCA 
GGTCTGGCAT ATTTTGCCTT TATGACCACC GGAGGCTATG TAGAGAGCAT ACCCATGGAA 
ACCTATAATA TCTTAACGGA TACATCCATA GCTGCAATTC CGCTGTTTAC GATTGCAGGC 
TATCTTTTGG CAGGAGGAAG TGCCGGAAAA AGGCTCTTGG ATTTTGTTAA AAGCTCTGTC 
GGCTGTATAA GAGGCGGCGT TGTGATTGCA GCAGTATTGG TCGCAACTTT TTTTACAACC 
TTCACGGGAG CCTCTGGAGT AACCATATTA GCCTTGGGAG GGATTTTAAG CGTAATTTTA 
ACAGGCTCGG GCTATTCGGA AGATGACTCG GAAGCCCTTA TAACGGCATC AGGTTCCATC 
GGACTCTTAT TACCTCCAAG CTTGGCCGTT ATAGTCTATG GAGCAACTAA CTTTATGACC 
GTAAACATAT TTGACCTTTT TAAGGGGGCT GTCCTTCCCG GAGTGCTATT GGCCTTGTCA 
ATGATAGTCA TAGGAGTTAT AAAGGATAAA AAATCAAAAA GAATCAGGTT TTCAAGAGAT 
GCCCTTGCTC AAAGTTTTAA GGCAGGTTTT TTAGAGCTTC TTCTTCCCGT ATTAATAGTG 
ATTGTATATT TTGGAGGCTA TTTTACCCTT TTTGAAACCG CAGCCTTTAC GGTTTTATAT 
TCGTTTGTGT TGGAAGTTTT AATAAGAAAG GACTTGAGCA TAAAAAAAGC CATCCACGTT 
ATTTTACAAA GTATACCGGT CGCAGGAGGA GTGCTCGTAA TAATAGGAGC CGCAAAGGGG 
CTTGCCCTCT TTTTAGTCTA TGCAGGAATC CCCCAAATAC TCTCAGATCT TGCAATCACC 
TTTGTCGGTT CAAAAATTTT ATTCCTGCTG CTGTTAAATA TTGTGCTGTT GATAGTAGGC 
TGTATCATGG ATTTATATTC GGCTATCTTG GTAGTATCGC CCCTTATAAT TCCCGTTGCC 
GAAAGCTTCG GTATACATCC GGTACATACC GGAGTAATAT TTTTAACTAA CCTGGCTCTC 
GGCTTTTTGA CACCGCCTAT CGGAATGAAC CTTTTTATAG CAAGTTATAC ATTTAAAAAG 
CCTGTAATAA AAATAGTAAA GAGCATACTG CCCTATCTGG CAGTTCAATT TGTTATATTG 
CTTTTAATTA CGTACATTCC GTGGTTCAGC ACTGTCTTTG TAGATTAA 

 

Protein sequence

MKKLVNGFIL ALTAVLIVLP FVSHILASLG GNSLEYERLI VQLVFVFACL AGLITTIEKK 
QLNIEVFTSK LNKKHQSIVH VTLSCVNTAI LTAIFLSVFP NYNMLSSEDH VLYIPIKIFF 
SALPPMYLIM LALEIKRNKC IISNIAGLLI GLLISTGSIL GLLNLVFGSW YPEINDSGLA 
VLLSGISTSV QIFSENAIWL IVLIFTVFSL FGMPLYIVLS GLAYFAFMTT GGYVESIPME 
TYNILTDTSI AAIPLFTIAG YLLAGGSAGK RLLDFVKSSV GCIRGGVVIA AVLVATFFTT 
FTGASGVTIL ALGGILSVIL TGSGYSEDDS EALITASGSI GLLLPPSLAV IVYGATNFMT 
VNIFDLFKGA VLPGVLLALS MIVIGVIKDK KSKRIRFSRD ALAQSFKAGF LELLLPVLIV 
IVYFGGYFTL FETAAFTVLY SFVLEVLIRK DLSIKKAIHV ILQSIPVAGG VLVIIGAAKG 
LALFLVYAGI PQILSDLAIT FVGSKILFLL LLNIVLLIVG CIMDLYSAIL VVSPLIIPVA 
ESFGIHPVHT GVIFLTNLAL GFLTPPIGMN LFIASYTFKK PVIKIVKSIL PYLAVQFVIL 
LLITYIPWFS TVFVD