Gene TDE0988 details

Gene Information

• Locus tag: TDE0988
• ID: 2739065
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1015222
• End bp: 1017165
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637159861
• Product: oligopeptide/dipeptide ABC transporter, peptide-binding protein
• Protein accession: NP_971597
• Protein GI: 42526499
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0747] ABC-type dipeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.356739
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTATC GTAAATATTT TAAATCACTT CTAAAAACAG CTTTTTTTTT GACGTTTTTT 
TTGTTTTTTT CATGTAATGA AATTCTTCCT CCTTCCGGAT ATCTGGACCA GCCTGCCTGC 
GATGCTTATG AGGCAATTAT AGCCGAAGAG AGTAAAAATC TTCCCGATTT TTCTTGTCCC 
CCTGTCCTTG TTGAAGATTT TAGCGTTCCC GGCCTCGATA AATCCCTTAA ATGGTATACA 
TCCTTTCCTA AAGATTATTC TTCAAAGGCT TTAAAAAAAG GAGGCCGATT TTACGGCTAT 
TTAAACGATA TTCCGAATAC GTTTAGGTAC TTGGGCCCCG GAGCTGATGA TAGTGCCGTT 
AGGATGTTTA ATACCCAGAT GCCTCTTTTA TGGGTTTCTT TAGAAAATTT CGATTTTATG 
CCCTGTTCGG CGACCCATTG GGCTGTGGAT TTGGAAAATA AGACGGTCTA CTATAAACTT 
TATGAAAAAA TGCTCTGGTC TGACGGAGAA CCCTGTACGG CAGATGATTG GATTTTTGCC 
TTAAAATTTT TACAGTCAAA AAAAATATTT GATCCTATTA AAAATTATTA TTACGGAAAT 
CTTTCAGTAA AAAAAATAAA CGATTTTTGT ATTTCGGTTC AATATTTGGG CGAGCAATCC 
TATACGGAAT ATGAACTTAT TGACCGTACC AATTTTAAGC CCATTGCGAG TCATTTTTAT 
AAGGGCGAGG TTCCCGATGA TTGGATAGCA GAATATAACC GCACCGTTGA ACCTACTACA 
GGCCCCTATA TTTTAACGGA ATACGATTAT AATCACGGCC TTAAATTCTC TAAGATAGAA 
AATTGGTGGG CTCATATCTA TCCTCATTTT AAGGGAATCG CCAACTTTGA CGAAATTTAT 
TACCGCATAA TCGTAGGGCG TAAGTCGCCC GCTTTTAATA AATTTTCCTT GGGTCTTTTC 
GATATTATTC ATTTGGATAA TCCTTCGGAG TGGGCTAGGG GACAAGACAG CTCTAATGTG 
CAGGAAGGTT TTGTAAATTT GTGGAAGGGC TATTATGTGC CCGTAAACGG CCCGACAGGT 
CTTTTTTTTA ATACGGCCGC CAAGCCCTTG GATAATGTAA GGGTTAGAAA GGGCTTGTAT 
TATGCTTTGG ATATGGAAGG GCTTATTTAT ACGGCCTTTG AAGGGCAAAG AAGCCGCCTT 
CATACTCTCG GAACGGGCCA GACTTGGGGT GATGCCGTAT TTAATAATGC CGAAATAAAA 
AAGCCTCCTT TTGACCCTAA AAAAGCTATG GAATTTTTTG CAGAAGCAGG CTACACCTCT 
TTAAATTCAT CGGGAATCTT GGTAAATAAA GAGGGCCGAG AGCTCAGCTT TGTTATTCTT 
TATAAGGATG AAGCAGAAAG ATGGATTTTC GGCTTTTTGT ATAGTCAGGC CTTAAAGGCC 
GGTGTAAGGC TTGATTTTAA GTACTATTCC GGCGGTATGA CAGAAAAAAT AGCTTCACGT 
GATTTTCAGG CTTGGTGGGG TGCTCTGCCT GCAAGCCAAA TACCCAATAA CTATACCCTT 
TTTCACTCTT CATATGCGGA TAAAAAACTT TTTGAAAACT TTTTCTCTTA TTCAAACCCC 
GAAATGGATG CTCTTTTAGA AAAGTATAAC GACGGTTCCC TTACATATTT TGAGAAAGCT 
GCCGTAAACC GCCAAATCGA AAAGATTGTT GATGAAGATG CTTTGATGAT TCCATCTTAT 
TATAAAAACA CGATACGGGT TATGGCATGG AAATGGATAT GCTTTCCTGC TTGGCTTAAT 
ATGAAATATC AGGACAACCT CTACGACCCG ATGTTCGGAT ACCTTTGGTT TGATGCCGAT 
ATTGAAGCGG AATGCAAGAA AGCAAGGGAA GAAAATAAGA TGCTCTCAGA TAATACTTAT 
TCTTTGAGTG ATAGGTATAA GTAG 

 

Protein sequence

MTYRKYFKSL LKTAFFLTFF LFFSCNEILP PSGYLDQPAC DAYEAIIAEE SKNLPDFSCP 
PVLVEDFSVP GLDKSLKWYT SFPKDYSSKA LKKGGRFYGY LNDIPNTFRY LGPGADDSAV 
RMFNTQMPLL WVSLENFDFM PCSATHWAVD LENKTVYYKL YEKMLWSDGE PCTADDWIFA 
LKFLQSKKIF DPIKNYYYGN LSVKKINDFC ISVQYLGEQS YTEYELIDRT NFKPIASHFY 
KGEVPDDWIA EYNRTVEPTT GPYILTEYDY NHGLKFSKIE NWWAHIYPHF KGIANFDEIY 
YRIIVGRKSP AFNKFSLGLF DIIHLDNPSE WARGQDSSNV QEGFVNLWKG YYVPVNGPTG 
LFFNTAAKPL DNVRVRKGLY YALDMEGLIY TAFEGQRSRL HTLGTGQTWG DAVFNNAEIK 
KPPFDPKKAM EFFAEAGYTS LNSSGILVNK EGRELSFVIL YKDEAERWIF GFLYSQALKA 
GVRLDFKYYS GGMTEKIASR DFQAWWGALP ASQIPNNYTL FHSSYADKKL FENFFSYSNP 
EMDALLEKYN DGSLTYFEKA AVNRQIEKIV DEDALMIPSY YKNTIRVMAW KWICFPAWLN 
MKYQDNLYDP MFGYLWFDAD IEAECKKARE ENKMLSDNTY SLSDRYK