Gene TDE0880 details

Gene Information

• Locus tag: TDE0880
• Symbol: cobT
• ID: 2740927
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 900114
• End bp: 901196
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637159754
• Product: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
• Protein accession: NP_971490
• Protein GI: 42526392
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG2038] NaMN:DMB phosphoribosyltransferase
• TIGRFAM ID: [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000148697
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATTT TAGAAAACAC ATTGAATTCG ATCAAACCCG TTTCGGAAGA AGAAGGAAAA 
AAGGCCAAGC TTTTTTGGGA CAGCCTTGCT CATCCGCCGG GCTCTTTGGG GGCTCTTGAA 
GAGATGACGG TCAGACTTGC AAAAATCAAG GGCTTTGACA ATTTAAAAAT CGATAAAAAA 
ATAACGGCTG TTTTTTGTGC GGATAATGGG GTTTATGCGG AAAAAATTAC CTCCCAGCCC 
CAGATTACCA CCTTCTTGCT TGCCGAGATT ATGCACACGG GAAAAACAGG TTTAGGAACA 
ATTTCAAAAT GGGCAGAAAG CGGTATTAGG GTTTACGATG TCGGGATGAT AAAAACGAGC 
GAACGGAAAA ATGTCATCAA TAAAAAGATA AAATTCGGTA CGGAAAATAT AGCCCAAGGT 
CCTGCGATGA GCCGCAAAGA CTGTATCCGC ATGATTGAAA CCGGAATAGA GGCGGCCTTT 
GAAATCGCTG ATGAAGGCTT CGATATTGCA GGAATAGGGG AGCTGGGTAT TTGCAATACT 
ACCACAACGG CGGCTGTGCT TTCAGGCCTT TGCGGAGTAG AGCCTGAACT GACTGTCGGC 
CGCGGGGCTT CTACGACAGA GGCTATGTAT GAGCTCAAGA TTAAGATCGT AAAAAAAGCT 
ATCGAAATAA ACGCCCCAAA AAAAGGCGAT TCAATCGATT GTATTTCGAA AGTCGGAGGC 
TTTGATATTG CGGCAATGTG CGGCTGTTAC ATAGGTCTTG CCGCCCGCGG AATTCCTGCC 
GTAATCGACG GTTATATTTC GAGTCTTGCA GCCCTCTGTG CCGTAAACTT AAATCCTCTT 
GTAAGGGATT ACCTTTTTGC TTCTCATAAG TCGGAAGAAA GGGGAGCTAA GATATGCACC 
GCTGAGCTTG GAATCGAGCC CGTCTTAAGT ATGAAAATGC GTTTGGGAGA AGGAAGCGGC 
TGTCCTCTCT TATTTAAGAT GCTTGAAGGG GCAGTCTTTA CCATGCAAAA TATGGGAAAA 
TTTACCGAAA CCATGATAGA CGGAGCCGAT TTAGTGGATA TCAGGAAGGA ACAGAATCCT 
TAA 

 

Protein sequence

MSILENTLNS IKPVSEEEGK KAKLFWDSLA HPPGSLGALE EMTVRLAKIK GFDNLKIDKK 
ITAVFCADNG VYAEKITSQP QITTFLLAEI MHTGKTGLGT ISKWAESGIR VYDVGMIKTS 
ERKNVINKKI KFGTENIAQG PAMSRKDCIR MIETGIEAAF EIADEGFDIA GIGELGICNT 
TTTAAVLSGL CGVEPELTVG RGASTTEAMY ELKIKIVKKA IEINAPKKGD SIDCISKVGG 
FDIAAMCGCY IGLAARGIPA VIDGYISSLA ALCAVNLNPL VRDYLFASHK SEERGAKICT 
AELGIEPVLS MKMRLGEGSG CPLLFKMLEG AVFTMQNMGK FTETMIDGAD LVDIRKEQNP