Gene TDE0638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0638 
Symbol 
ID2739363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp672578 
End bp673540 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content38% 
IMG OID637159514 
Productoligopeptide/dipeptide ABC transporter, permease protein 
Protein accessionNP_971252 
Protein GI42526154 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAGA AAAAAATTGC AAGCTATGAT GAGCCGGCTA AGAAACTAAA TTTAAGTCCA 
TCGGATTTTG AGCCCGTTCT AAGAACAAAA AAGACGCTTC AAACAACAAG GGTCAGTATA 
GGCTTTTGGG AAGATGTAAG GCGGAGGTTT AAAAAAAGCA AGAGAGCTCT TTTTTCTTGT 
GCAGTTTTAG GGTTAATTAT TTTGATATGT TCATTCGGCC CGATTTTAAG CGGCCGGTCA 
GCCGATGACG GAAATTTAAA AGAAAAAAAT TTAAGCCCTT CTTTTTCTCA TTTTTTTGGA 
ACGGATGAAT TGGGGCGTGA TATATTTACA AGAGTCTGTA AGGGCGGACG CGTTTCTCTT 
ATAATTGCAA TTATAGGAGC TGCAATCGAC ATGGGAATAG GTTTAATTTA TGGAGGCCTC 
TCGGCATACA CAGGCGGAAG AACCGATACT ATAATGATGC GTATAGTCGA AATACTTTCA 
AGTATTCCTT ATTTAATTAC GGCTATTTTA ATTTCTCTTA TTTTCGGTAA AGGAATTTTT 
TCGATTATCA TTGCAATGAC AATTACAGGC TGGTGTTTTA CTGCACGGCT TGTGCGCGGT 
CAGGTCTTAC AGATAAAAAA TCAGGATTTT ATTTTGGCAG CACAGGCCTT GGGCACAGGT 
TCATTTAAAA TTATAATAAA GCATCTACTT CCCAACACTG TGAGTATTAT GATAATAGCC 
TTAACCTTTG ATATTCCTTC ATTTATTTTT GGAGAAGCTT TTTTATCTTA TATCGGCTTA 
GGAATTCAAC CCCCATATAC CAGCTGGGGA GTGTTGGCAT CAGAGGCACA AAAGACAATG 
CTCTTTTATC CTTATCAATT ATTTTTTCCT GCCCTTTTTA TAAGTCTGAC AATTTTATCG 
TTGCAGATTA TCGGCGATGC TTTACGGGAT GCAATGGATC CGCATTTAAG GAAATACAAA 
TGA
 
Protein sequence
MSEKKIASYD EPAKKLNLSP SDFEPVLRTK KTLQTTRVSI GFWEDVRRRF KKSKRALFSC 
AVLGLIILIC SFGPILSGRS ADDGNLKEKN LSPSFSHFFG TDELGRDIFT RVCKGGRVSL 
IIAIIGAAID MGIGLIYGGL SAYTGGRTDT IMMRIVEILS SIPYLITAIL ISLIFGKGIF 
SIIIAMTITG WCFTARLVRG QVLQIKNQDF ILAAQALGTG SFKIIIKHLL PNTVSIMIIA 
LTFDIPSFIF GEAFLSYIGL GIQPPYTSWG VLASEAQKTM LFYPYQLFFP ALFISLTILS 
LQIIGDALRD AMDPHLRKYK