Gene TDE0143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0143 
Symbol 
ID2739298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp164153 
End bp165163 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content42% 
IMG OID637159013 
Productthiamine ABC transporter, thiamine-binding protein 
Protein accessionNP_970760 
Protein GI42525662 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATC ATTTACGCTC TATTTTAATT TTCTCTTTTT TAATTATCGG TTGTGCCGCT 
CTTTTTGCAG GCGGTGCAAA AGAATCTGAC GGAACAAAGG TTGTAGTTTA CACAACAAAA 
TCCTTTGCTG CCGACTACGG CCCCGGTCCG AAAATTGCCG AACTCTTTAA GGCAAAAACG 
GGCAAAGAAG TTGAGTACGT TATCTGCAAA GAAGGCATTT TAAACAGAGT CATACTGGAA 
GGTAAGGCCT CTACAGCGGA TGTCCTCATC GGTATAGATA ACCACCTTAT CGAAAAAGCC 
CGCAAGGCAA AAGTTTTAAA AGCCTACAAA CCTACGGCCG CAGACAAGAT AGATTCAGCT 
GTTCTTATTG CCGATGACTG GCTTTTAACC CCCTTTGACT ACGGCTATTT TGCATTTATG 
TTCGATACAA AAGCCAAAAT CAAAAAGCCC TCATCCTTAA AAGAGCTGAT CGAGCCTGCT 
TATGCAAAAA AGATTGTTAT TTTGGATCCG AGTTCCAGCA CAACAGGACT GGGCTTGGCC 
GCTTGGACAA GGGCTGTTTT TGGAGATAAT TACCTAGACT TTTGGAAGGC CCTCAAGCCA 
AATATCTTTG CCATGGCTCC CAAGTGGAGT ACGGGCTACG GCTATTTTAC AGCCGGAGAA 
GCTCCCATAG CCATTTCTTA CACAAGCAGC CTAGCTTCCC ATGTTTTATA TGATAAAACA 
GACCGATTTC AACCATTGAT TTTTGAAGAA GGACATATTA TTCAAATTGA AGGTATGGGT 
ATTGCCGCCA ATGCAGCTAA TACTAAAGGA GCAAAGGAAT TTATAGACTT TATGCTGACG 
GAAGAAGCTC AAAGCCTCCT TCCCGAAACC CAGTTTATGT ATCCCGTTAT CAAGGGACTT 
GCTCTTCCTG CTTCTTATAA GGATGTTCCC AAACCTGCAA AAGTTTTGCG TATTCCTTCA 
GAAGATCAAA CCGAATCGGT AAATGCCGTA ATCAATGTTT TACAAAAATA A
 
Protein sequence
MKNHLRSILI FSFLIIGCAA LFAGGAKESD GTKVVVYTTK SFAADYGPGP KIAELFKAKT 
GKEVEYVICK EGILNRVILE GKASTADVLI GIDNHLIEKA RKAKVLKAYK PTAADKIDSA 
VLIADDWLLT PFDYGYFAFM FDTKAKIKKP SSLKELIEPA YAKKIVILDP SSSTTGLGLA 
AWTRAVFGDN YLDFWKALKP NIFAMAPKWS TGYGYFTAGE APIAISYTSS LASHVLYDKT 
DRFQPLIFEE GHIIQIEGMG IAANAANTKG AKEFIDFMLT EEAQSLLPET QFMYPVIKGL 
ALPASYKDVP KPAKVLRIPS EDQTESVNAV INVLQK