Gene TDE0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0124 
Symbol 
ID2741739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp142334 
End bp142963 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content37% 
IMG OID637158994 
Productrhomboid family protein 
Protein accessionNP_970741 
Protein GI42525643 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTATT TAAGAAAACC TTTTAAATAT ACATATAAGA ATGCCGTACT TATCATAGCC 
CTGATAAATG CCGGTGTTTT TGTTTTTACA AGTCTTTTTA GAAATTTAAG TGCATATTTA 
GGCCTTGTAC CTATTCTTGT AGTGGAAGCA CAAACTTATT GGCAGTTTTT CACTTATCAA 
TTTGTCCATG GGGACTTTTT TCATTTGGCA TTTAATATGC TCGCCTTATT CTTTTTTGGT 
GTTCCCGTAG AACGCAAGAT TGGAACAAAG GAATTTATAC TTTATTATCT TTTGATAGGG 
ACAATTGGTG GGATCTTGAG CTTTTTGGTA TATGCTGCAA CAGGCTTTTA TACTATTACC 
CTTATAGGTG CATCAGGAGC AATTTTTGGA GTTTTACTTT TATATGCAGT GCTTTATCCC 
AATTCTGTGA TCTACATTTG GGGTGTGATT CCCGTGCCGG CCCCTCTTTT GATTTTAGGT 
TATGCCGTAA TCGAGTTAAT AAGCATTTTT TCCATAGGTG ACGGAGTAGC TCATTTGACG 
CATTTTATAG GACTCATTGC AGGCTGGGTA TATATAAGAA TCCGTTTCGG AATAAAACCG 
CTTAAAGTCT GGAATTCAAC GGGGCGGTAA
 
Protein sequence
MKYLRKPFKY TYKNAVLIIA LINAGVFVFT SLFRNLSAYL GLVPILVVEA QTYWQFFTYQ 
FVHGDFFHLA FNMLALFFFG VPVERKIGTK EFILYYLLIG TIGGILSFLV YAATGFYTIT 
LIGASGAIFG VLLLYAVLYP NSVIYIWGVI PVPAPLLILG YAVIELISIF SIGDGVAHLT 
HFIGLIAGWV YIRIRFGIKP LKVWNSTGR