Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0026 |
Symbol | |
ID | 2741641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 31916 |
End bp | 33106 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637158896 |
Product | TraB family protein |
Protein accession | NP_970643 |
Protein GI | 42525545 |
COG category | [S] Function unknown |
COG ID | [COG1916] Uncharacterized homolog of PrgY (pheromone shutdown protein) |
TIGRFAM ID | [TIGR00261] pheromone shutdown-related protein TraB |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.820387 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGACGAAA ATAACGAAAA AACTTTAAAG CGTATTCTTT TAAAAGACCG CGAAATTATT CTTTTAGGAA CGGCTCACGT TTCTAAAGAA AGTATTAAGG ATGTTGAATC TACAATTAGG GAAGAAAATC CCGATTGTGT ATGTGTAGAA TTGGATGAAG TAAGGTATAA GTCCTTAACC TCAAAAGACA CTTGGCAGCA AATCAATATC TCCCAAGTTT TACGGGAAGG AAAAGGATTT TTACTCCTTG CAAATCTGGT TCTAGCCTCT TTTCAAAAAA AACTTGGAAG CGACCTCGGC GTAAAACCCG GCGATGAAAT GAAGGCCGCA ATTGAAGTTT CTCAAGAACT GAATATTAAA ACCGAAATGG TTGACCGCCC GATTCACACA ACATTAAAAA GAGCTTGGGC AAAAAACCGC GGCTGGGGAA GATCAAAACT ATTGGCAACC CTTTTAAGTG CAGCCTTTTC AAACGAAAAA CTTGAAGAAG CCGAAATCGA AAAATTAAAA AATCAAAGCG CAATGGATAA CATGATGCAG GAAATGGCCG AGTATCTGCC GAACATAAAA GGCGTTTTAA TAGATGAGAG AGACCGCTAC CTTGCATCAA AAATTTGGGA AAGCAGCGGC AAAAAAATTG TGGCTGTCTT GGGTGCAGGC CATCTTCCCG GAACGGAACG CTTTATAAAA GAACTGGAAG CAGGTACAAA AACAACGGAT GTATCCGACA TTGAAGTAAT TCCGCCGAAA AGCACAGTAA GCAAAATTGC CGCTTGGATA TTTCCCATAG TTATAATAGG CTTAATCATT CTCGGCTTTT TTAAGGGAGG CGGTATAAAA ACCGGCCAAA TGCTCTTATC CTTTGTTCTT TGGAACGGAG GACTCGCAGC GATAGGAGCC ATTATCGCCA TGGGGCATCC TCTGGCCATC CTAGCTTCAT TTTTAGGAGC TCCATTTACA ACGATAAACC CGTTTTTGGG TATAGGAATG ATTTCAGGCC TTGTACAGGC TTGGGCAAAA AAGCCGCAAG TAAAAGACAT GGAAAACCTT ACACATGATG CTGGAAGCTT TTCAGGCTGG TATAAGAACA GAATAACAAA GGTTCTTCTT GTTTTTATTC TATCTTCTCT CGGAAGCTCG ATAGGAACAT TTATGACGGT TCCGGCTCTT ATTGCTAATC TGATTAAATA A
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Protein sequence | MDENNEKTLK RILLKDREII LLGTAHVSKE SIKDVESTIR EENPDCVCVE LDEVRYKSLT SKDTWQQINI SQVLREGKGF LLLANLVLAS FQKKLGSDLG VKPGDEMKAA IEVSQELNIK TEMVDRPIHT TLKRAWAKNR GWGRSKLLAT LLSAAFSNEK LEEAEIEKLK NQSAMDNMMQ EMAEYLPNIK GVLIDERDRY LASKIWESSG KKIVAVLGAG HLPGTERFIK ELEAGTKTTD VSDIEVIPPK STVSKIAAWI FPIVIIGLII LGFFKGGGIK TGQMLLSFVL WNGGLAAIGA IIAMGHPLAI LASFLGAPFT TINPFLGIGM ISGLVQAWAK KPQVKDMENL THDAGSFSGW YKNRITKVLL VFILSSLGSS IGTFMTVPAL IANLIK
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