| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0366 |
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| Symbol | sctU |
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| ID | 1245719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | - |
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| Start bp | 426526 |
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| End bp | 427608 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637061167 |
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| Product | type III secretion system protein |
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| Protein accession | NP_296744 |
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| Protein GI | 15834985 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGAAA AAACAGAAAA GGCGACCCCC AAGCGTCTTC GAGATGCTAG AAAAAAGGGG
CAGGTAGCCA AATCTCAAGA TTTTCCTTCT GCGATTACGT TCATAGTGTC CATGTTCATG
ACGTTTTCTC TGTCTTCATT TTTTGCTGAA CATTTAGGAG GGTTCTTAGT ATCCATTTTC
CGAACGGCTC CCCAACAACA TGATCCTCGC CTTGCCGTTT ATTATTTGAA AAACTGCTTA
ATGCTAATTC TTACAGTCTC ACTTCCTCTA CTAGGAGCAG TAGGCTTTGT AGGATTATTA
ATAGGATTTT TAGTTGTTGG TCCTACTTTC TCCACAGAAG TTTTCAAACC AGATTTAAAA
AAATTCAATC CGATTGAAAA CCTTAAACAA AAATTCAAAT TAAAAACGTT TATTGAATTA
CTTAAATCTA TTTTTAAAAT CTCTGGAGCA GCATTAATTC TCTATATTGT TCTAAAAAAT
CGTGTAGAAC TTGTTATTGA AACAGCTGGT GTTCCCCCTT TAGTTACAGC GCAAATATTC
AAAGAGATTT TATACAAGGC TGTTACTTCC ATTGGCATGT TTTTCCTTGT TGTTGCGGTA
ATAGACCTTG TGTATCAACG ACACAGTTTT GCTAAAGAAC TGAAGATGGA AAAGTTCGAA
GTTAAACAGG AATTCAAAGA TACAGAAGGG AACCCAGAAA TTAAGGGGCG CCGTCGTCAA
ATTGCGCAAG AAATTGCCTA TGAAGACACT TCCTCTCAAA TTAAACATGC GAGCGCTGTC
GTATCTAACC CTAAGGATAT AGCCGTTGCC ATCGGTTATA TGCCTGAAAA ATACAAAGCT
CCATGGATTA TAGCCATGGG AGTAAACTTA AGAGCACGAA GAATTATTGC GGAAGCTGAG
AAGTATGGAG TTCCCATAAT GCGGAACGTC CCCTTAGCAC ACCAGCTTTT AGATGAAGGA
AAAGAGTTGA AGTTTATTCC TGAGACCACA TATGAAGCGG TTGGGGAAAT CCTTCTTTAC
ATTACTTCTC TTAATGCGCA AAACATTGAG AATAAAAACA TTAACCAATT CGATAATCTG
TAA
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| Protein sequence | MGEKTEKATP KRLRDARKKG QVAKSQDFPS AITFIVSMFM TFSLSSFFAE HLGGFLVSIF
RTAPQQHDPR LAVYYLKNCL MLILTVSLPL LGAVGFVGLL IGFLVVGPTF STEVFKPDLK
KFNPIENLKQ KFKLKTFIEL LKSIFKISGA ALILYIVLKN RVELVIETAG VPPLVTAQIF
KEILYKAVTS IGMFFLVVAV IDLVYQRHSF AKELKMEKFE VKQEFKDTEG NPEIKGRRRQ
IAQEIAYEDT SSQIKHASAV VSNPKDIAVA IGYMPEKYKA PWIIAMGVNL RARRIIAEAE
KYGVPIMRNV PLAHQLLDEG KELKFIPETT YEAVGEILLY ITSLNAQNIE NKNINQFDNL
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