| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2590 |
|---|
| Symbol | |
|---|
| ID | 3775187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2674093 |
|---|
| End bp | 2674608 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637801044 |
|---|
| Product | pilin-like protein-like |
|---|
| Protein accession | YP_401607 |
|---|
| Protein GI | 81301399 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 59 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.545428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGC AAACTCCTGC CTCGCGCGCT CAAATTCAGT CGGGCTTCAC CGTCGTTGAA
ACCCTAACAG CCCTCACGAT TAGCACCATT CTTGCGGCTG TTTCCTTTCC ATCGATGGCG
GGTATGTGGG GCGATTATGC CACTCGGCTC GCTCAAACCA ATGCCCAAGC CCAGTTAATG
ATTCTCAAGC GTGAGGCCCA ACGAACCAAT CGCACCTGTC AAGTCACTTT TGCCAATAAT
CTCGCTACCG CCAATCCTCC CGATTGTCTG GTCAGTATGG GGCGATCGCT CAGTGACTCA
GGCATGGGTT TTGACCTTGG TGTCACAGTC AGCGGCAGCT TAGCCAGTGT CACTTTTTCT
CCTGTTGCCA CCACGACCCC CAGCAGCAAC GGCACGTTGC GGTTTAGCCA TGCCTGGACT
AACACCACAC GCTGCTTGGT GCTCTCACAA CCCCTCGGCG TGATACGCCT CGGCACAATT
CAACAAAATA CCTGCGTCAA GGATGGTGGT TCATGA
|
|---|
| Protein sequence | MDLQTPASRA QIQSGFTVVE TLTALTISTI LAAVSFPSMA GMWGDYATRL AQTNAQAQLM
ILKREAQRTN RTCQVTFANN LATANPPDCL VSMGRSLSDS GMGFDLGVTV SGSLASVTFS
PVATTTPSSN GTLRFSHAWT NTTRCLVLSQ PLGVIRLGTI QQNTCVKDGG S
|
|---|
| |