Gene Synpcc7942_2548 details

Gene Information

• Locus tag: Synpcc7942_2548
• Symbol: leuD
• ID: 3775141
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus elongatus PCC 7942
• Kingdom: Bacteria
• Replicon accession: NC_007604
• Strand: +
• Start bp: 2627423
• End bp: 2628031
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637800998
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_401565
• Protein GI: 81301357
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.0488432
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGTAGCG AAATCCTGGA AGTAACCGGT CGGGCTGTGC CGTTGGTGGG CAACGATATC 
GACACCGATC GCATCATCCC AGCCCGATTC CTGCGCAGTG TCACCTTTGA CGGTCTGGGT 
GCCAACGTCT TTATCGATGA TCGCCAGCAA CTGCAGGGCC AACATCCCTT TGACCAAGCA 
CAGTATCAGG GCGCGACGGT TCTGGTGGTC AACCGTAACT TTGGCTGTGG TTCTAGCCGA 
GAGCACGCTC CTCAGGCGAT CGCTAAATGG GGCATTCAGG CGATTGTGGG CGAAAGTTTT 
GCGGAGATTT TCTTTGGCAA CTGCCTCAGT CTGGGGATTC CCTGCGTGAC AGCTGGGGCG 
GCAGCAGTGG CTGAATTGCA AGCAGCGATC GCATCTGACC CTAGCCAGCC TGTCACAGTC 
GATCTAGAAG AACTGCAAGT TCGACGCGGA GCTTGGAGCG CAGAGCTGAC ACTCGCTCCT 
GGGCCACTCC AAATGCTGCG TAGCGGTCAG TGGGATGCAA CCGGTCAACT AGTCGCCAAT 
GCAGAAGCGA TCGCTCAAAC TGCCGCCAAT CTTCCTTACG TGGGCTGGCA AGCGATCGCA 
GCCAGCTAG 

 

Protein sequence

MGSEILEVTG RAVPLVGNDI DTDRIIPARF LRSVTFDGLG ANVFIDDRQQ LQGQHPFDQA 
QYQGATVLVV NRNFGCGSSR EHAPQAIAKW GIQAIVGESF AEIFFGNCLS LGIPCVTAGA 
AAVAELQAAI ASDPSQPVTV DLEELQVRRG AWSAELTLAP GPLQMLRSGQ WDATGQLVAN 
AEAIAQTAAN LPYVGWQAIA AS