| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2479 |
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| Symbol | |
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| ID | 3774499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 2560375 |
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| End bp | 2560941 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637800928 |
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| Product | pilin-like protein |
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| Protein accession | YP_401496 |
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| Protein GI | 81301288 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.209449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0000256314 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAAGGT TAGCAATGTC ACGATTAAAA CTCGTCTTAG AGCAGCGTTT ACTTTATGCT
CATTTACGCC GAGCAGTGCG ATCGCAAGGT TTTACAATCA CTGAGATCTT AGTCGTTTTA
ATTGTGGCAG GGATTCTAGC CGCGATCGCA GGACCTAGCG TGGCTGGTTT TTTGGGTCAG
CAAGAGCTAG ATCAAGCTAC TTCAGAAGTA CAGTCAGCCA TTCTAGAGAT GCAACGTGAA
GCTCAGCGGT TAAATCGAAC CTGTACCTTG AAAGCCACTG ATCTTGTTGC TGGTGGAATT
AACCGTGATA CAACAGCAGC ACCCACGGGG AATTGTCTTT TACGTAGTCG TAGCTTTGCT
AGAAATCAAA TCACAGTAGC TCAGAATCTA AGTTCAAACG TACTCGCATA TCCCAGCGGC
AATGTTTACT GGACAGGTAA TGCAACCCAA GAAATTCGCT TGAGTAGTAC ATTAACGCCA
GTACAACGCT GTGTCGTTCT TGCACGACCC CTAGGGCTAG TCAGAACTGG TACTGTGCAA
AGCGGTAGCT GTCGAACTTC AAGCTAG
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| Protein sequence | MERLAMSRLK LVLEQRLLYA HLRRAVRSQG FTITEILVVL IVAGILAAIA GPSVAGFLGQ
QELDQATSEV QSAILEMQRE AQRLNRTCTL KATDLVAGGI NRDTTAAPTG NCLLRSRSFA
RNQITVAQNL SSNVLAYPSG NVYWTGNATQ EIRLSSTLTP VQRCVVLARP LGLVRTGTVQ
SGSCRTSS
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