| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2369 |
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| Symbol | |
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| ID | 3774652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 2435041 |
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| End bp | 2438211 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637800817 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_401386 |
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| Protein GI | 81301178 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.11897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.738324 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCTTT CGATCGCAAA TATCTTTATC AAGCGGCCAG TGTTAACAAC GGTCTGCTCG
ATTCTGATTA CTCTGGGCGG CCTTGTTTGC TTACCCATTT TGCCTATTGA GCAACTCCCA
GATATTGCCC CACCCCAAAT CCAAGTCTCA GCAACCTATG TTGGGGCCGA TGCTGAAACA
GTTGAAAACA CTGTCACTTC AATCCTTGAG AACCAAATCA ACGGGGTTGA GGGGATGGAA
TACATCACCT CAACGAGTGC GATCGGTCAA AGCTCCATCC AAGTCTATTT TGATCCGACG
CGATCGCCTG ACCTCGCTCA GGTCGACGTT AATAACTTAG TCAGTGTTGC GATCCCACAA
CTGCCCCAAG CAGTACAACA GCAGGGGATT GCAGTCACGC AGTCATCCCC TTCAATTCTC
CAGTTCTATA CGTTTTCTTC GCCTACAGGC GAATTTGATG CCCAGTTTAT TAGTAACTAT
CTCAGTCTCT ATGTTCAGCC AGCACTCGCC CGTGTAAAAG GGGTTGGTCA AGCAAACCTG
TTTGGTAACT TAGAGTACTC TATGCGACTC TGGCTCGACC CAAATCGCTT GGCGAGCTAT
GGCTTGACCG CAGAAGATGT CGCCAGTGCT TTACAGAGCC AAAACCAAAT CATTCCGGTT
GGGCAAGTTG GCGGTCCGCC AGTCAATAGC GATCAGGCTT ACACATTCAT TTTGCGACTG
CAGGGGCAAG GGCAACTCTC TACGGTTGAG CAATTCAATA ACGTCGTTTT AAAAACCGGT
GAGGACGGCA CTCTCGTTCG AGTCAAGGAT GTCGGTCGAG CCGAGGAAGG TGCCCAAAGC
TATTCCGTGA CTCTGGCTGC AGATGGTCGC CCGGGCGTCG GTCTCGGTAT TTATCAGCTG
CCAGGCAGTA ACGCTATTGA TGTCGCCAAC GGCATTCGTG AGCAGCTTGC CATTCTAGAG
CAGCAGTTCC CACCAGGCTT GGAAGGGAAG CTAGTCTTCG ACGTCACTGA CTTCGTTAAC
GCTTCACTGT CGGAAGTGCT GATCACCCTG GTTCAGGCGA TCGCACTGGT TATTCTCGTC
ATCTTTATCT TTTTGCAAGA CTGGCGCACC ACGCTCATTC CAGCGATCGC AATTCCTGTC
TCGCTGGTTG GTACCTTGGC TTTTATTCAA GCCTTTGGGT TTTCGATCAA CTTGCTGACC
CTCTTTGGCT TGGTGTTGGC CACGGGCTTG GTGGTGGACG ACGCGATCGT GGTGGTTGAA
GCAATCACAG AAAAAATAGA AGAGGGCAAA ACACCGTTGC AGGCCTCCAT TGAGGCCATG
GATATCCTCT TTGGTGCCGT CATTGCCACG TCAGTCGTTC TGTTTGCTGT CTTCATTCCT
GTGGCTTTTT TCCCGGGGGC AACTGGACGG ATCTATCAGC AGTTCGCACT GACGCTCACG
TTTACGATCC TGATTTCAAC CTTCAACGCC CTGACCTTCT CGCCCGCGAT GAGCGCTTTG
CTGCTCCGGC CGGCCAAACA GCAGCAGGGT TGGTTGGGTA AGTTTTTCAA CCTATTCAAT
GCAGGCTTTG ATCGGGTGCG AATCGGTTAC TCCAAAGCCT TGGCTATTAT CGATCGCCTC
AAATTTCTGG TCATCGGCCT ATTCGCTGCT GGTCTGGCCC TGACGGGATG GTTGTTTACG
ACAACCCCCA CCGGCTTTGT TCCCACAGAA GACCAGGGTT ACTTCCTCGG TTTGATCATT
GGCCCCGAAG GAGCCCCCCT TAACTACACC CAGAAAGTCG GCCAAAAAAT TCAAAGCATT
CTGGAGACTG AGCCTTCTGT CACCTCAACG GCTGTGATCA GCGGCTTTAG CTTCATTGGA
CAGGGCAATA ACCTCGGAAT CTATTTCGCA TCGCTCAAGC CCTGGGATGA GCGCAAGGCT
GCCGATCAAT CTGCAGAAGC GATCGTGGGT CGAATCAACC AAAAGTTATT TGAAGGGATT
TCTGAAGCTC AAGTTCGGAC TGTGTTGCCA CCTGCAATTC CCGGCTTTGC AGCCTACGGC
GGGGTGCAGT TCCTCATCAC AGACCAAACG GGCGGCGCGC TCTCTGTCAG CCAGTTTCTA
GAGTCTGTCA ACAAAATCAT TGGACTCGCT CGCGAGAATC CGATCACCCG CCAAACCTTT
ACACCCTTCA CGGCCAACTC GCCCCAGATC GAAATTGACG TCGATCGCGA CAGACTGGCA
GCCCTCAACA TCGACTTCGG TGAAGCGCTC CAGACCTTGG GCAGCTACAT GGGCGGTCAG
TATGTCAACC AGATCACCCA GTTCGGCCGC TCCTATCAGG TCTATATCCA AGCGGATAAC
GGCTTCCGAG CAACACCTCA AGCCCTGACT CAGATTTATG TGAAGTCGCG AGATGGAGCC
ACAGTTCCCC TCTCTGAATT TCTGACGATT CGGCAGCAGG TTGGGCCACT GTACATCACT
CACTACAACC TTTTCCGTTC GATCGAAGTC GATAGCTTTG CGGCTCCCGG CACCAGTACC
GGTCAGGTCA TTGAAGGTCT GAAAGATGCC TTCCAGAAAG CAAACTTCCA GCGGTTTGGA
AACGGCCTGG TTGGTCTGGC CCGCGAAGAA GTCTCTGCAG GAACGTTGGC ACCCCTGATC
TTTGGCCTTG GGGTGGTGGT CGTCTTCCTC GTCTTGGCGG CGCTCTACGA GAGCTACGTC
GACCCACTGA TCATTCTGCT GACCGTTCCC TTGGCAATCT TGGGCGCCCT CGTCTTCCTC
AACCTGCGGG GCATCCCCTT GGACGTCTAT GCTCAGGTCG GCTTGGTGAT GCTGATTGGC
TTGGCTTCTA AGAACGCGAT TTTGATTGTT GACTACGCCA ATGAGGCGGT TGCCAAGGGT
ATGGGCTATA CCGAAGCGGC GCTGGAAGCG GCGAAGCTAC GGTTCCGCCC GATTGTAATG
ACAGCTATTT CCAGCTTGAT TGGCTTCTTT CCCTTGGTCA TTGCCCAGGG GGCAGGCGCC
GCTAGTCGTT GGTCGCTGGG GACCGTCGTC TTTGGTGGGC TCTTGGTTGC AACAGTTCTC
AGCTTGCTGA TCGTGCCGGC GAACTATGTG ATTCTGAAGT CGATCACCCG ACGTTTCTTT
AGCAAGAAGC GGCATGACCC GGAGACTGGT CAGCCTGAAT TGACCTCTTA G
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| Protein sequence | MLLSIANIFI KRPVLTTVCS ILITLGGLVC LPILPIEQLP DIAPPQIQVS ATYVGADAET
VENTVTSILE NQINGVEGME YITSTSAIGQ SSIQVYFDPT RSPDLAQVDV NNLVSVAIPQ
LPQAVQQQGI AVTQSSPSIL QFYTFSSPTG EFDAQFISNY LSLYVQPALA RVKGVGQANL
FGNLEYSMRL WLDPNRLASY GLTAEDVASA LQSQNQIIPV GQVGGPPVNS DQAYTFILRL
QGQGQLSTVE QFNNVVLKTG EDGTLVRVKD VGRAEEGAQS YSVTLAADGR PGVGLGIYQL
PGSNAIDVAN GIREQLAILE QQFPPGLEGK LVFDVTDFVN ASLSEVLITL VQAIALVILV
IFIFLQDWRT TLIPAIAIPV SLVGTLAFIQ AFGFSINLLT LFGLVLATGL VVDDAIVVVE
AITEKIEEGK TPLQASIEAM DILFGAVIAT SVVLFAVFIP VAFFPGATGR IYQQFALTLT
FTILISTFNA LTFSPAMSAL LLRPAKQQQG WLGKFFNLFN AGFDRVRIGY SKALAIIDRL
KFLVIGLFAA GLALTGWLFT TTPTGFVPTE DQGYFLGLII GPEGAPLNYT QKVGQKIQSI
LETEPSVTST AVISGFSFIG QGNNLGIYFA SLKPWDERKA ADQSAEAIVG RINQKLFEGI
SEAQVRTVLP PAIPGFAAYG GVQFLITDQT GGALSVSQFL ESVNKIIGLA RENPITRQTF
TPFTANSPQI EIDVDRDRLA ALNIDFGEAL QTLGSYMGGQ YVNQITQFGR SYQVYIQADN
GFRATPQALT QIYVKSRDGA TVPLSEFLTI RQQVGPLYIT HYNLFRSIEV DSFAAPGTST
GQVIEGLKDA FQKANFQRFG NGLVGLAREE VSAGTLAPLI FGLGVVVVFL VLAALYESYV
DPLIILLTVP LAILGALVFL NLRGIPLDVY AQVGLVMLIG LASKNAILIV DYANEAVAKG
MGYTEAALEA AKLRFRPIVM TAISSLIGFF PLVIAQGAGA ASRWSLGTVV FGGLLVATVL
SLLIVPANYV ILKSITRRFF SKKRHDPETG QPELTS
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