| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1980 |
|---|
| Symbol | |
|---|
| ID | 3774167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 2050905 |
|---|
| End bp | 2051894 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637800425 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_400997 |
|---|
| Protein GI | 81300789 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.362231 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.28719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATT TGCCTTTCAC TCTGGACCAA TTACGCATTT TGCGAGCGAT CGCTGCTGAG
GGTAGCTTCA AGCGTGCGGC TGACAGCCTT TACGTGTCGC AACCGGCAGT GAGCTTGCAG
GTGCAAAACC TCGAACGGCA GCTGAATGTG CCGCTGTTCG ATCGCGGGGG TCGCCGCGCC
CAACTGACGG AAGCCGGACA TCTGCTGCTC AGCTACGGCG AACGCATCCT CAGCCTCTGC
GCTGAGACTT GTCGCGCGAT CGAAGACCTA CAAAATTTAC AGGGCGGCAC GTTGATCATT
GGTGCTAGCC AAACCACGGG CACTTATCTC TTGCCCCGCA TGATCGGCCG TTTTCGCCAG
CGCTACCCCG ACGTTGCCGT GCAACTGCAC GTCCACTCCA CCCGCCGCAC CTCTTGGAGC
GTGGCCAATG GTCAGATTGA CCTCGCGATT ATTGGCGGTG AAGTGCCGAC GGAACTGCAG
GATTCCTTGG TCACGATTCC CTATGCTGAG GATGAGCTGG CCTTGATCCT GCCGGTGTCG
CACCCGTTGA CCCAACAAGC CAGCATTCAG CGCGAAGACC TCTACAAGCT GCAGTTCATT
GCCCTTGATT CTCAATCAAC CATCCGCAAG GTGATTGACC AAGTGCTCAG CCGCAGCGGC
ATTGAGACCC GTCGCCTGCG GATTGAGATG GAGCTCAACT CGATCGAGGC AATTAAAAAT
GCGGTGCAAG CGGGTCTAGG GGCAGCTTTC GTCTCGGTTT CCGCGATCGA GAAGGAACTG
GAGATGGGCA GTTTGCACCG TGCCCAAACC AATGATCTGT GCGTTCAACG CACCCTATCG
GTAATCTACA ACCCCAACCG CTACCGCTCG AAAGCAGCTG TGGCCTTCAG CCAGGAAATC
TTGCCAGATT TCGCAACTGA AAACAGTCCG CTCTGGAAAG GGCAAGCCAG CCTCGACGAC
TTCATCCCAA AGCGATCGCC CGTGGCTTAG
|
|---|
| Protein sequence | MSDLPFTLDQ LRILRAIAAE GSFKRAADSL YVSQPAVSLQ VQNLERQLNV PLFDRGGRRA
QLTEAGHLLL SYGERILSLC AETCRAIEDL QNLQGGTLII GASQTTGTYL LPRMIGRFRQ
RYPDVAVQLH VHSTRRTSWS VANGQIDLAI IGGEVPTELQ DSLVTIPYAE DELALILPVS
HPLTQQASIQ REDLYKLQFI ALDSQSTIRK VIDQVLSRSG IETRRLRIEM ELNSIEAIKN
AVQAGLGAAF VSVSAIEKEL EMGSLHRAQT NDLCVQRTLS VIYNPNRYRS KAAVAFSQEI
LPDFATENSP LWKGQASLDD FIPKRSPVA
|
|---|
| |