| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1869 |
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| Symbol | |
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| ID | 3775232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1938280 |
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| End bp | 1941534 |
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| Gene Length | 3255 bp |
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| Protein Length | 1084 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637800310 |
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| Product | cation efflux system protein |
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| Protein accession | YP_400886 |
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| Protein GI | 81300678 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.443113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAA CGCCGCCTCC GAAGCTCAGC CTCAGCGGGC TTTCGATTCG TCGCCACATC
GGTACCCTGA TGCTGACCTT GGCCACAGTG GTTGTGGCAG TCTTTCTTGT CAGTCGGCTT
CAGGTCGATC TCTTGCCGTC GATCACCTAT CCGCGAATTG GGGTGCGGCT GACGGCACCG
GGACTGGCGC CGGAAATCGC CGTGGAAGAA GTCACCAAGC CCCTCGAAGA ATCGCTCTCG
GCGACTGAAG GGGTAGTGCA AATCTTCTCG CGCACCCGCG AAGGCGATGT CAGCATTGAC
CTCTTCTTCG AGCCGGGAGG AAACATTGAC CAAGCCCTCA ACGATGCGAC GGCCACCTTC
AACCGGGCCC GATCGCGGCT CCCCGAGGGC ATTGAAGAGG CACGACTATT CAAGTTCGAC
CCATCCCAGT TGCCGGTCTA CGAGTTTGCC CTTTCCTCCA CTGAGCGATC GCCCCAGGAA
TTGCGCCTGC TTGCCGAAGA AGAACTGGCC CGAGAGCTGA CCTTGCTGCC AGGGGTCGCA
GCGGTTGATG TCACCGGCGG TCTCGAGGAG GAAGTGCGGG TTCTGCTCGA CCCCGATCGC
CTGCAGGCTT TAGGCATTGG GCTGGAGACC GTCCTCAATG AATTGCAAGA GAGTAACCAA
GATGTTTCTG GTGGCCGACT GCTGGGCAGT GCTGAGCCCC TGACGCGGAC AACAGGACGT
TTTCAAGACG CCCAAGACAT TTTAGATCTG ACCTTCGAAC GAGCGGGTAG CGAAACCGAT
CCGTCCCAGC AGTTACGGCT GCGAGACTTT GCCCAGGTCA TTGACGGCAG CGCTGAGCAG
CGGATTTTCG TCAGCCTCAA TGGTCAGCCA GCCGTCAAGG TTAGCGTCCA GAAACAGCCG
GAAGCCAACA CGATCGCGGT TGTTGACGCT GTTAAACAGC GCTTGAACCA ACTTCAGGCC
AATCAAGTCC TCGGCGAAGG AGTGCAGGTA TTGCCGACCT TGGATGAGTC GATTTTTATT
CAAAATGCGA TCGGTAATGT CACCAGCTCC GGTCTGGCTG GGGCTGGCCT TGCCGCGCTG
GCGGTACTGC TCTTCCTCGG CTCTTGGCGG CAGACCCTGA TCATCGTGAT TTCAATTCCG
CTGGCGACGC TGGCCGCGAT CGTGATGATG CGACTAGCGG GCTTCTCCCT CAACATCTTC
AGCTTGGGCG GACTGGCACT GGGCGTTGGC ATTGTTGTCG ATAACTCGAT CGTCATGTTG
GAGACCATCG CCGATGGCGT TGGCATCACC CCTGGTCGCG ATAGCCGCAG TCTGCTTTCG
CCGCGACAGG TGATTGAGCG GGCGATCGAC AGCAGTCAAA AAGTTGAGTC AGCCCTGATT
GCTTCAACGA CCACCAACTT AGTGGCGGTA CTACCCTTTT TGATGCTGGG TGGCTTTATT
TCCCTGCTGT TCAGTGAGCT GATTCTGACG ATCAGTTTTG CCGTGGCGGC TTCAATTTTG
GTGGCGCTGA CGGTTGTGCC GGCTATGGCC TCGCGACTGT TGGCTCGCAA GGAAACCAGT
GGTCTCGATC GCTGGCCCCC GCTGCTGGCC TTTCAGCACC AATTTGCTCG ACTGCAAACG
GCCTATGGTC AGGTGCTCCA GCGTCTGATC AACCGGCCGC TGCGCACGAT CGCGATCGCT
TTTCTCGTCT TGGGTCTGAG TGGCGCCTCC TTGCTGGGCC AGCTCTCCCA GGAGATTCTG
CCTCGGATTA ATACAGGCCA AGCGCAGCTC TTTGTCCAGT TCCCACCAGG TACTCCCTTG
GTGGACAACC AACGGGTGAT GGCGGCGATC GAGCAGTTGA TCCTCGAGCA ACCCGAAACA
GACTATGCCT TTTCGACGAT TGGGGGCTCC CTGTTTGGGG CCAATACGAC CACCAACGTT
CTACGCAGTT CCAGCACAAT CACGCTGAAA CCTGGCAGTG ATGTCGATCA GTTTGTTGAA
CGACTGACGC CCGCCTTCAA CCAACTCAAT TTGGTGGATA CCTTGGTGCG GGTCACCCCA
GGCTCAGTAC GCGGTTTGAT CACCAATAAC TCGCCGCTAC GCGGTGCCGA TATCGACGTC
ATTCTCCAGA GTGAAGATCG CGAACAACTG GCGATCGCGG GTGAACAGGT GATGCGAGCT
CTGGGGCAAG CGCAACTCGC CCGCTATCGA CCCGACAGCG ATCGCCGCGA ACCAGAATTG
CGAATCCAGC TCGATCGCGA ACGAGCAGCG GCTCTCGGCC TGAATCCCAG TCGCGTGGGC
AATACAATTC AAACCGCGAT TGAAGGTTCG ATACCAACCC GTCTACAGCG GGGCGATCGC
CTGGTGGATG TGCGGGTGGA AGTTGCCAAC ACGGCCATCA ATACGCCGGC TCAATTGCTG
CAGCTGCCGC TGTTTAGCAA CACGGGCTCG CTGATTCGCC TCAATGACAT TGCCCGTCTT
GAGACGGGGG CTGCCCCCTC CGAAATTCAG CGGATTAACC AACGACAGGT CTTCCAAATT
GCCGGCAACC TCAGTCAAGG TGCCAGCTTG AGTGCTGCGA TCGCAGAGGC TGAGCGCCTG
ATTGACTCCG TCGATCTCCC CTCGGGAGTC AGTTTGTTGC CCAGTAGCGC TGCCGAGAGC
AACCGGCAGT TGCAGGCCAG TCTGCCGATT CTGGGTGGCT TGGCTGGCTT CTTGGTCTAC
GTGGTCATGG CGGTGCAGTA CAACTCGCTG ATCGATCCGC TAGTGATCAT GTTCACGCTG
CCTCTGGCCT TAGCCGGTGG CATCCTGGGG CTCTACTTCA CGAACACCGC GATCGGTGCA
ACGGTCGTCG TTGGGGTGGT GCTACTGGTT GGGATCGTCG TCAATAACGC GATCATCCTG
GTGGAACTGG CCAATCAACT GCGGGAAGAG CAGGGCTGCG ATCGCCGCTC GGCCATACTG
CAAGCGGCCC CGCAACGCCT TCGCCCCGTG CTGATGACGA CACTCACTAC CGTGCTGGGG
ATGTTGCCCT TGGCGCTGGG CATTGGTCAG GGCAGTGAGT TCCTGCAACC GCTGGGGATT
GTCGTTTTCT CGGGGCTCTC CCTGGCAACG GTGCTAACCC TGCTGGTCAT TCCCTGCTTC
TACGTGCTGC TCCATGGGCT TGCTGAGCGC TGGACCCAGC ATCCTTTGAC AGTGACGGCC
CTGCCGTTCG TGCCCGGGGG GCTGCCGCGT CCTTCGGTGG GCTCCACAGC AGACAAGTCC
TCGATTGACC CCTAG
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| Protein sequence | MSPTPPPKLS LSGLSIRRHI GTLMLTLATV VVAVFLVSRL QVDLLPSITY PRIGVRLTAP
GLAPEIAVEE VTKPLEESLS ATEGVVQIFS RTREGDVSID LFFEPGGNID QALNDATATF
NRARSRLPEG IEEARLFKFD PSQLPVYEFA LSSTERSPQE LRLLAEEELA RELTLLPGVA
AVDVTGGLEE EVRVLLDPDR LQALGIGLET VLNELQESNQ DVSGGRLLGS AEPLTRTTGR
FQDAQDILDL TFERAGSETD PSQQLRLRDF AQVIDGSAEQ RIFVSLNGQP AVKVSVQKQP
EANTIAVVDA VKQRLNQLQA NQVLGEGVQV LPTLDESIFI QNAIGNVTSS GLAGAGLAAL
AVLLFLGSWR QTLIIVISIP LATLAAIVMM RLAGFSLNIF SLGGLALGVG IVVDNSIVML
ETIADGVGIT PGRDSRSLLS PRQVIERAID SSQKVESALI ASTTTNLVAV LPFLMLGGFI
SLLFSELILT ISFAVAASIL VALTVVPAMA SRLLARKETS GLDRWPPLLA FQHQFARLQT
AYGQVLQRLI NRPLRTIAIA FLVLGLSGAS LLGQLSQEIL PRINTGQAQL FVQFPPGTPL
VDNQRVMAAI EQLILEQPET DYAFSTIGGS LFGANTTTNV LRSSSTITLK PGSDVDQFVE
RLTPAFNQLN LVDTLVRVTP GSVRGLITNN SPLRGADIDV ILQSEDREQL AIAGEQVMRA
LGQAQLARYR PDSDRREPEL RIQLDRERAA ALGLNPSRVG NTIQTAIEGS IPTRLQRGDR
LVDVRVEVAN TAINTPAQLL QLPLFSNTGS LIRLNDIARL ETGAAPSEIQ RINQRQVFQI
AGNLSQGASL SAAIAEAERL IDSVDLPSGV SLLPSSAAES NRQLQASLPI LGGLAGFLVY
VVMAVQYNSL IDPLVIMFTL PLALAGGILG LYFTNTAIGA TVVVGVVLLV GIVVNNAIIL
VELANQLREE QGCDRRSAIL QAAPQRLRPV LMTTLTTVLG MLPLALGIGQ GSEFLQPLGI
VVFSGLSLAT VLTLLVIPCF YVLLHGLAER WTQHPLTVTA LPFVPGGLPR PSVGSTADKS
SIDP
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