Gene Synpcc7942_1752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1752 
Symbol 
ID3775452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1821018 
End bp1821770 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content57% 
IMG OID637800191 
Producthypothetical protein 
Protein accessionYP_400769 
Protein GI81300561 
COG category[C] Energy production and conversion 
COG ID[COG1413] FOG: HEAT repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.253022 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAGTG ATGATCTCTA CTTGATTGAG GACATGGAAA CGGCCTTAGC CGACCCCCTC 
GATCAGCTCC TCCAAGCGGA AGACACCACC CCGCCAGATC CTGAAGTGAT GCTGGCGCAG
CTTCAGGATG CCAACGCCCT CAATCGTTTG GCAGCCGTTC GGGCTTTTGC GGCATTGACT
GAGCCCAAGG CAATTCCTGC CCTGATCAAA GCGCTGGATG ATAGCTGCTC CAATATCCGA
ACCGCCGCCG CCTATGCTTT GGGGCGCAAC GTCAGCCACC AAGCTGTTGA CGTTTTGATT
GAGTGTCTGC GCCACGATCA GAACGACAAT GTGCGGAAGG CCATCGCTTG GGCACTGGGC
AACTATAGCG ATCGCCGCTC GATTCAACCC CTGATTGAAG CCCTGCGCCG TGACATCGCC
CCAGTTCGCC TCTGGGCAGC GAGTTCCTTG GGCAATACTG CCGTTGTCGA CTACGAGACT
GTCATCGGTG CTGTTCCTAG TCTGATTGAA GCCCTGCGCC GCGATGCGGA AGCGGATGTT
CGCAGCAACT GCGCTTGGGC ACTCGGTCAA CTCTGCCGAC CCCTACCGGC CAACATTGTC
TATGCGACTG TCATTGACGC GTTGATTGAA GCGTTGGTCG AAGACGAGGA TCTGAGCGTG
CGCGAAGATG CCAAAGCCTC GCTGTTGCAG GTAGGTGATG CTCGCGCTTT GCAAATGATT
GAAACGCTGC AGCAGGATGG CTTGCTCTGG TAA
 
Protein sequence
MRSDDLYLIE DMETALADPL DQLLQAEDTT PPDPEVMLAQ LQDANALNRL AAVRAFAALT 
EPKAIPALIK ALDDSCSNIR TAAAYALGRN VSHQAVDVLI ECLRHDQNDN VRKAIAWALG
NYSDRRSIQP LIEALRRDIA PVRLWAASSL GNTAVVDYET VIGAVPSLIE ALRRDAEADV
RSNCAWALGQ LCRPLPANIV YATVIDALIE ALVEDEDLSV REDAKASLLQ VGDARALQMI
ETLQQDGLLW