| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1602 |
|---|
| Symbol | |
|---|
| ID | 3775668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1667296 |
|---|
| End bp | 1668033 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637800035 |
|---|
| Product | RNA methyltransferase TrmH, group 1 |
|---|
| Protein accession | YP_400619 |
|---|
| Protein GI | 81300411 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.289024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.479369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGC GCATCGTTCT GGTCGAGCCG GCGGGTGCCC GTAATGTCGG AGCGATCGCA
CGAGTGATGA TGAATTTTGG CTTGTCAGAC TGGGCGATCG TGCGGCCGCG CTGTGACATC
CATGGTGGTG AGGCGCGCCA AATGGCGGTG CATGCAGCGG CGCTGCTTGA GCAAGCTGTC
CTCGTGGACA ACCTCCCCAG CGCGTTGGAG GGGTGTCAGT GGGTAGCAGC CACGACCGGC
CAACGCGATT TGCGAGACCT GCCGCTGGAG TCGCCTACCC AAATCCTGCC GTGGTTGCGC
CAAGGCCCCG CTGCCCTGAT CTTTGGCCGA GAAGACAGCG GTTTGCAGCG ATCGGAGCTC
AGTTTGGCGC AGCGCTATCT AACCTTTCCC ACCGACCCTG CCTATCCCTC GCTCAACTTA
GCCCAAGCAG TTGGCCTCTG TTGCTATCAC TACGCTTGCC TGTCTGAGGC GGATTCCCGA
GGCGTGCCAC AGCAGGAATC CAGTCCAGCA GCAGTCCGGG CAGCATTCGA GCAACTGCAT
GGCTACACCA GCGATCTCGA AGCCTTGCTC CTGCGTGTGG GTTACCTGCA CTCCCACACA
GCCGCCAGTC GCATGGAAAA AATTCGCGCG ATCGCCCAGC GATCGGCCCT CACTGCGGAA
GAGGTAGCTC TGTTGCGTGG CATGGTGCGT CAGCTCAATT GGGCACTAAA TCAAGTCCCA
TCTAGCGATC GCCCTTGA
|
|---|
| Protein sequence | MSLRIVLVEP AGARNVGAIA RVMMNFGLSD WAIVRPRCDI HGGEARQMAV HAAALLEQAV
LVDNLPSALE GCQWVAATTG QRDLRDLPLE SPTQILPWLR QGPAALIFGR EDSGLQRSEL
SLAQRYLTFP TDPAYPSLNL AQAVGLCCYH YACLSEADSR GVPQQESSPA AVRAAFEQLH
GYTSDLEALL LRVGYLHSHT AASRMEKIRA IAQRSALTAE EVALLRGMVR QLNWALNQVP
SSDRP
|
|---|
| |