| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1523 |
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| Symbol | |
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| ID | 3774947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1577150 |
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| End bp | 1579024 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637799956 |
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| Product | DNA-directed RNA polymerase subunit gamma |
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| Protein accession | YP_400540 |
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| Protein GI | 81300332 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02387] DNA-directed RNA polymerase, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00969587 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAAGC AGGAACAGCG GTTTGACTAC GTCAAGATCG CACTTGCCTC ACCGGAGCGT
ATCCGGCAGT GGGGTGAGCG CACGCTGCCC AATGGTCAAG TAGTCGGTGA AGTCACCAAG
CCTGAAACCA TCAACTATCG GACACTGAAG CCGGAGATGG ACGGGCTGTT TTGCGAAAAA
ATCTTTGGTC CTGCGAAGGA CTGGGAATGC CACTGCGGTA AGTACAAACG TGTTCGGCAC
CGCGGCATTG TCTGCGAGCG TTGTGGCGTG GAAGTCACCG AATCACGGGT GCGACGGCAC
CGTATGGGCT TCATTAAACT GGCTGCTCCG GTTGCCCACG TTTGGTACCT CAAAGGCATC
CCGAGCTACA TCGCGATTCT GCTCGACATG CCCCTGCGAG ACGTTGAGCA AATCGTCTAT
TTCAACTCCT ACGTCGTCCT CAACCCAGGC AACCACAGCG AGCTGCAGTA CAAGCAGCTA
CTGAACGAAG ACCAGTGGAT GGAGATCGAG GACCAAATCT ACGCTGAGGA ATCTGACCTC
GAAGGTATTG AGGTTGGCAT CGGTGCAGAA GCCCTGCAAC AGTTGCTGCA GGATTTGAAC
CTCAATGAAG AGTCGGAAAA ACTCCGTCAA GAGATTGCTG AGTCGAAGGG CCAAAAACGG
GCCAAGTTAA TCAAACGCCT GCGTGTGATT GATAACTTCA TTGGCACAGA GTCTCGGCCC
GAGTGGATGG TGCTGAATGT CATCCCGGTG ATCCCTCCCG ATCTCCGCCC GATGGTGCAG
TTGGATGGTG GCCGCTTTGC CACCAGTGAC CTCAACGATC TCTACCGTCG GGTGATCAAC
CGGAATAACC GGTTAGCGCG TCTGCAGGAG ATTCTCGCAC CTGAGATTAT CGTCCGTAAC
GAAAAACGGA TGTTGCAGGA AGCAGTAGAC GCTCTGATCG ACAACGGTCG TCGTGGCCGT
ACGGTCGTCG GTGCCAACAA CCGACCCCTC AAGTCCCTCT CGGACATCAT CGAAGGGAAA
CAGGGTCGCT TCCGGCAAAA CTTGCTGGGT AAACGGGTTG ATTACTCCGG TCGGTCGGTC
ATCGTCGTCG GCCCCAACCT GAAAATTCAC CAGTGTGGTC TGCCACGGGA AATGGCGATC
GAGCTGTTCC AGCCGTTTGT TATCCATCGC CTGATCAAAA ATCACAGCAT CAACAACATC
AAGCAGGCCA AAAAACTCAT TCAGAAGAAC GATCCCTTGA TTTGGGATGT CTTGGAAGAG
GTGATTGAAG GCCACCCTGT GATGCTGAAC CGGGCCCCGA CGCTGCACCG TTTGGGGATT
CAAGCCTTCG AACCGATCTT GGTAGAAGGC CGTGCGATCC AGCTTCATCC CTTGGTCTGT
CCAGCGTTTA ACGCTGACTT TGATGGTGAC CAAATGGCGG TTCACGTCCC CCTCTCGATT
GAAGCCCAGG CTGAAGCTCG TATGCTGATG CTGGCTTCGG GCAACATTCT GTCGCCGGCA
ACGGGGCAAC CCATTGTCAC GCCGTCCCAG GATATGGTCT TGGGCTGCTA CTACTTGACC
GCCGAGAATC CTGGTGCTCA GAAAGGGGCT GGACGCTACT TTGCCAACCT CGAAGATGCC
ATCCGCGCCT TTGAGCAGGG CTCTGTCGAT CTTCATGCCT GGGTCTGGGT GCGCTTTGAT
GGCGAAGTGG AAAGCGAGGG TGAAAGCGAC GAACCGGAGT CGGTGGTCGC AGCCGATGAT
GGCACGGTCA CCAAGACCTA TCGTTTCCGC CGAATTCGCG AGACTGAAGA CGGGCAGCGT
CTCTCCCAGT ACGTGAAAAC AACGCCCGGT CGCATTCTCT TCAACAACAC TGTTCAGACT
GCGTTGATCC ACTAG
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| Protein sequence | MAKQEQRFDY VKIALASPER IRQWGERTLP NGQVVGEVTK PETINYRTLK PEMDGLFCEK
IFGPAKDWEC HCGKYKRVRH RGIVCERCGV EVTESRVRRH RMGFIKLAAP VAHVWYLKGI
PSYIAILLDM PLRDVEQIVY FNSYVVLNPG NHSELQYKQL LNEDQWMEIE DQIYAEESDL
EGIEVGIGAE ALQQLLQDLN LNEESEKLRQ EIAESKGQKR AKLIKRLRVI DNFIGTESRP
EWMVLNVIPV IPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLARLQE ILAPEIIVRN
EKRMLQEAVD ALIDNGRRGR TVVGANNRPL KSLSDIIEGK QGRFRQNLLG KRVDYSGRSV
IVVGPNLKIH QCGLPREMAI ELFQPFVIHR LIKNHSINNI KQAKKLIQKN DPLIWDVLEE
VIEGHPVMLN RAPTLHRLGI QAFEPILVEG RAIQLHPLVC PAFNADFDGD QMAVHVPLSI
EAQAEARMLM LASGNILSPA TGQPIVTPSQ DMVLGCYYLT AENPGAQKGA GRYFANLEDA
IRAFEQGSVD LHAWVWVRFD GEVESEGESD EPESVVAADD GTVTKTYRFR RIRETEDGQR
LSQYVKTTPG RILFNNTVQT ALIH
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