| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1490 |
|---|
| Symbol | |
|---|
| ID | 3773663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1540818 |
|---|
| End bp | 1542809 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637799923 |
|---|
| Product | nitrate transport ATP-binding subunits C and D |
|---|
| Protein accession | YP_400507 |
|---|
| Protein GI | 81300299 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.810592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAT TTGTTGCTGT TGAAAACATT GAAAAATCAT TCCCTCTGAG TGGTGGGAAT
GAATACCTTG CCCTTAAGGG TATCGATCTT GAAATCAAGC AAGGTGAATT CATCTCGCTG
ATTGGTCACT CCGGTTGTGG GAAGTCCACC CTGCTCAACC TGATTGCTGG TCTAGAGTTG
CCAACCGATG GCGCGGTCAG TCTCGAAGGT CAGCAGATCA CCGCACCAGG GCCAGACCGG
ATGGTGGTCT TCCAGAACTA CTCGCTTTTC CCTTGGCTGA CGGTGCGCGA AAACATCGCG
CTTGCGGTCG ACGAAGTGCT GCGCGATCTG CCCAAAGAAG AGCGGCAGGC GATCGTGGAA
GAACATATCC AACTGGTGGG CTTGGGTCAT GCAGCGGATA AGCCACCCGC TCAACTTTCT
GGCGGAATGA AACAACGGGT GGCGATCGCA CGGGGCTTGG CGACTCGTCC GAAGTTGCTG
CTTCTCGATG AACCCTTTGG GGCGCTGGAT GCACTAACGC GCGGCAATCT GCAAGAGAAG
CTGATGCAGA TTTGCGAAGA GAATCACGTC ACGGCCGTTA TGGTCACTCA TGACGTTGAT
GAAGCGGTCT TACTTTCCGA TCGCATTGTG ATGCTAACCA ATGGGCCCGG CTCGAAGATC
GGTGGCATCC TGGAGGTCGA TATTCCTCGC CCGCGCAAAC GCATGGATGT GGTGCATCAC
CCCAGCTACT ACAGCCTGCG ATCGGAAATC ATCTACTTCC TCAACCAGCA AAAACGGGTC
AAGAAACTCA ATGCCCGCAA GGTGACTACC GTGGCGCGGC ACGGTCTGGA AAAGGTCAAT
CTGGAAATCG GCTATGTGCC CCTAATGGCC TGTGCACCGC TGGTGGTGGC CCAAGAAAAA
GCCTTCTTTG CCAAACACGG CCTCGATGAA GTCAGCTTGG TGCGAGAGAC CAGTTGGCGT
GGCATTGTCG ATGGGTTGAC TGAAAACTAC CTCGATGCAG CCCAGATGCC AGCCGGCATG
CCGGTCTGGA TGTCTGTGGG TGGCCAAGGT GGCAGTCCTC TACCGATCGT TTCGTCCTTG
ACAATGAGCC GCAACGGTAA CGGCATTACC CTCTCCAAAG CCCTGTATGA CGAGGGTATT
CAGACGGTCG ATGACTTCCG TAACTTGCTG CGCAGCACGG CTGACAAGCA GCACATCATG
GGCATTGTCC ATCCAGCTTC GATGCACAAC TTGCTGTTGC GCTACTGGCT GGCAGCGAAT
CAGATCGACC CCGATCGCGA TGTGCAATTG CGCACGATCC CTCCGGCGCA GATGGTGGCC
GACCTCAAGG ACGGCACGAT CGATGGCTAC TGTATCGGTG AGCCTTGGAA TGCGTGGGCA
GCCCAAAAAG AAATTGGCTT CACAATCGCC AGCGATCTGG AAATTTGGAA TGGTCACCCC
GGCAAAGTAC TCGGTGTCCG TGAAGACTGG GCTAATCGCT ATCCCAACAG CCATGTGGCC
TTGGTCAAAG CGCTGCTAGA AGCCTGCCAG TACTGCGAAG ATCCTGCGAA CTGGGATGAA
CTGCGCGAAC TGTTAAGCGA TCGCCGCTAC CTGAGCTGTC CGAAGGAGTA CATCCAGTTC
AGCCAAAGCA CTGCCGACGA CTTGGCGGTG CCTCACCATC GCTTTGCTGG AGCGGGCGTT
AACCGTCCCA GTCGGACAGA GCATCTCTGG ATGATGACCC AGTTGGCTCG CTGGGGTGAT
GTGCCCTTCC CCCGCAACTG GGTTGAAATC TTGGAGCGGG TTTGCCGGGT TGGGGTGTTT
AGCACCGCCG CCCGCGAACT GGGGCTCTCG GAGGTCGTCA ACTATCAGCG CAGCACGCCG
GTTGAACTGT TTGACGGCGT CCCCTTCAAC GCTGAAGACC CGATCGCTTA CCTCAATTCC
CTGCCCATCC ACCGCGACTT CAGCGTGGCA GAAATTGCAC TCGATCAGCC CCGCCCGATC
GCAGCTGCCT AG
|
|---|
| Protein sequence | MSLFVAVENI EKSFPLSGGN EYLALKGIDL EIKQGEFISL IGHSGCGKST LLNLIAGLEL
PTDGAVSLEG QQITAPGPDR MVVFQNYSLF PWLTVRENIA LAVDEVLRDL PKEERQAIVE
EHIQLVGLGH AADKPPAQLS GGMKQRVAIA RGLATRPKLL LLDEPFGALD ALTRGNLQEK
LMQICEENHV TAVMVTHDVD EAVLLSDRIV MLTNGPGSKI GGILEVDIPR PRKRMDVVHH
PSYYSLRSEI IYFLNQQKRV KKLNARKVTT VARHGLEKVN LEIGYVPLMA CAPLVVAQEK
AFFAKHGLDE VSLVRETSWR GIVDGLTENY LDAAQMPAGM PVWMSVGGQG GSPLPIVSSL
TMSRNGNGIT LSKALYDEGI QTVDDFRNLL RSTADKQHIM GIVHPASMHN LLLRYWLAAN
QIDPDRDVQL RTIPPAQMVA DLKDGTIDGY CIGEPWNAWA AQKEIGFTIA SDLEIWNGHP
GKVLGVREDW ANRYPNSHVA LVKALLEACQ YCEDPANWDE LRELLSDRRY LSCPKEYIQF
SQSTADDLAV PHHRFAGAGV NRPSRTEHLW MMTQLARWGD VPFPRNWVEI LERVCRVGVF
STAARELGLS EVVNYQRSTP VELFDGVPFN AEDPIAYLNS LPIHRDFSVA EIALDQPRPI
AAA
|
|---|
| |