| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1435 |
|---|
| Symbol | |
|---|
| ID | 3773607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1488975 |
|---|
| End bp | 1490723 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637799867 |
|---|
| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
|---|
| Protein accession | YP_400452 |
|---|
| Protein GI | 81300244 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.456152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.457656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAAG CTGCCGCTAT CACCATGCCG ATCGACCCTC GCAACCTCAA TACTCTTTGG
TCTTCTGTTC TAGCGGAGAG CTTTGTGAGG CTGGGACTGC AAACCGTGGT GATCTGCCCA
GGCTCCCGCT CGGCACCGCT GGCAATCGCT TTTGCAGAGC ATCCAGAAAT CGATGCCATC
CCGATTTTGG ATGAGCGTTC GGCTGGTTTC TTCGCCCTAG GGCGAGCAAA AGCCAGTCAC
CGACCCGTTG CCTTGATCTG TTCCTCTGGA ACTGCGGGTG CCAACTTCTA TCCGGCAGTG
ATCGAAGCCA AAGAGAGTGG CGTGCCGCTA CTGGTCATCA CCGCCGATCG CCCACCAGAG
CTGCGTCAGT GTCATGCCGG CCAGGCGATC GATCAGCTGA GGCTCTTCGG CAGCTATGCG
CTTTGGGAGG CCGAACTGGC CTTGCCTGTG CTGGATTTAG GTTTACTGCG CTACCTGCGA
CAAACGGCTC AACAGGCTTG GCAACAGGCA CTGCGGGGCG GACCGGTTCA TCTCAATCAA
CCGTTGCGGG AACCCCTCGC GCCGATCGCC GATCCCGCCA CTCAAACTTG GTTAGCGCAA
CAGTGGCCCG GCGAGAATTT CTTCGCAGAA TTGCTTACAG CTGTACCCAC CCCACAGATT
CAGCAACCGC TACCGCCACT ACCCTCACAG GGACTGATTA CTGTGGGCCC GATCGCCCCA
GAAGATCCGG CCGCGTTTGT GCAAGCGATC GCACAGCTTT CAGCGCATCT GGGCTGGCCA
GTGCTCAGTG ATGCTGTGAC GCCCTTGCGA CAGTTCGCTG ATCACTGTCC ACGGTTGATC
AGTAGCTATG ACTTGATCCT GCGGCAACCC CACTGGCGAG CCAGTCTCCA GCCTGAAGCA
GTGCTGCAAA TTGGTGAATT GCCCACCAGC AAGGAACTGC GGCTGTGGTT GACTGAGCAA
ACCTGCCCCC GCTGGATTGT GTCGCCCCGT CCAGAGAATT TTGATCCCCT GCACGGATCC
AGCCATCATC TGCCGGTGAC GGTAGAGGCG ATCGCTATCC CAGCCACAAT CGCACCTGCC
AGTGACTATA GTCGCCAGTG GCAGCAAGCA GAGACTGCTG TTCAAGCCGC GATCGCCCAG
CATCTAGCCC AGGTTCCTGA CCTGACAGAA CCTGGCATTG CTCGGTTGCT CAGTCAGCAT
CTACCTGCGC AAACGCCGAT CTTTGTGGCC AATAGTACGC CGATTCGCGA TCTGGAATGG
TTTTGGCTGG CGAATGATCA GCGGCGATCG CTCTACTGCA GTCGCGGAGC CAATGGCATT
GATGGCACGC TCTCCACCGC GATCGGGATT GCCCATCAAA ATCGCCCCAG TGTGCTGATT
ACCGGTGATC TCTCGCTCTT GCATGACAGC AATGGCTTTC TGCAGCGATC GCAGTTGCAG
GGGCATCTCA CCGTGGTGTT GATCGATAAT TCCGGCGGCG GCATCTTTGA GTTGCTGCCG
ATTCGCGACT GTGGACCCAG TTTTGAGCCC TTTGTAGCCA CTCCGCAAAC GGTGGACTTT
GCTGCACTTT GCCAAGCCTA CGGCGTCGAT TATCAGGCGA TCGCCACTGA GGCGGAGCTG
ATCAAAGCGA TTCAAACCCT GCCGACATCT GGCATCCGAG TCCTCCATCT GTTCACCGAT
CGCCGACAAA ATGCCGCTTG GCGACGCGCC TTATTTGCCG AGCTAGCGGC GATCCCCAGC
CAGAGCTGA
|
|---|
| Protein sequence | MGQAAAITMP IDPRNLNTLW SSVLAESFVR LGLQTVVICP GSRSAPLAIA FAEHPEIDAI
PILDERSAGF FALGRAKASH RPVALICSSG TAGANFYPAV IEAKESGVPL LVITADRPPE
LRQCHAGQAI DQLRLFGSYA LWEAELALPV LDLGLLRYLR QTAQQAWQQA LRGGPVHLNQ
PLREPLAPIA DPATQTWLAQ QWPGENFFAE LLTAVPTPQI QQPLPPLPSQ GLITVGPIAP
EDPAAFVQAI AQLSAHLGWP VLSDAVTPLR QFADHCPRLI SSYDLILRQP HWRASLQPEA
VLQIGELPTS KELRLWLTEQ TCPRWIVSPR PENFDPLHGS SHHLPVTVEA IAIPATIAPA
SDYSRQWQQA ETAVQAAIAQ HLAQVPDLTE PGIARLLSQH LPAQTPIFVA NSTPIRDLEW
FWLANDQRRS LYCSRGANGI DGTLSTAIGI AHQNRPSVLI TGDLSLLHDS NGFLQRSQLQ
GHLTVVLIDN SGGGIFELLP IRDCGPSFEP FVATPQTVDF AALCQAYGVD YQAIATEAEL
IKAIQTLPTS GIRVLHLFTD RRQNAAWRRA LFAELAAIPS QS
|
|---|
| |