Gene Synpcc7942_1422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1422 
Symbol 
ID3773594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1475694 
End bp1475993 
Gene Length300 bp 
Protein Length99 aa 
Translation table11 
GC content54% 
IMG OID637799854 
Productcarbon dioxide concentrating mechanism protein CcmL 
Protein accessionYP_400439 
Protein GI81300231 
COG category[C] Energy production and conversion
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4576] Carbon dioxide concentrating mechanism/carboxysome shell protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0125943 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.634835 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTG CTAAGGTTCG CGGAACCGTA GTCAGTACCT ACAAAGAGCC CAGCCTGCAA 
GGGGTAAAGT TCTTGGTTGT TCAGTTCTTG GATGAGGCTG GACAGGCACT TCAAGAGTAT
GAGGTTGCTG CTGACATGGT TGGCGCTGGC GTTGACGAGT GGGTGTTGAT TAGCCGCGGC
AGTCAAGCGC GCCATGTGCG CGATTGTCAG GAACGACCGG TTGATGCAGC TGTCATTGCC
ATCATCGATA CGGTCAACGT GGAAAACCGC TCCGTCTACG ACAAACGCGA GCACAGCTAA
 
Protein sequence
MRIAKVRGTV VSTYKEPSLQ GVKFLVVQFL DEAGQALQEY EVAADMVGAG VDEWVLISRG 
SQARHVRDCQ ERPVDAAVIA IIDTVNVENR SVYDKREHS