Gene Synpcc7942_1233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1233 
Symbol 
ID3773521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1253790 
End bp1254473 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content42% 
IMG OID637799662 
Producthypothetical protein 
Protein accessionYP_400250 
Protein GI81300042 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0271776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTGGC ATTTTCTTAG ACTTTCCCTG GAACGCCCCT ACAATCAGCT ATTGTTTATT 
CTTGTTGCGA TAATCTCTGT TGGGATTATC TTCAAGATCA ACCCAATTGC AACAATTGCT
GTTTCTTTTA TCCTGTTTAG CAGCTTGCTA CAAGTCATCA AAATTGCACG CCCCTCACTG
CAGACATCCA AGTCCCTACT TAGGTTTTCC CTATTAACTT TCAGCATTAT TGTCATCAAT
GAATTAGGAG TTCTACAACC CTTTCCCGGT CTTAGTGAAA TTTTTCGATT TGTTACCCTT
ATCGCCCTAT CAGTTTTTTT GAGTCTTGTA ATTATACTGC TGATCAAAAC TCTAATGCAT
GAGTCGCAAG TCACTGCCGA CCTCGTCAAA GGAGGTATTT GTATCTATTT TTTAGTTGCA
ATTCTTTGGT CGCTCCTCTA TGAGGCGATC GCTGTTTTTG ATCCTCTCGC TTTCTTGATA
TTGCCGGAGC ACAAAGACAA TAATCCTTAT GTTTACTTCA GCTTTATCAC GCTGACCAGC
ACAGGCTTCG GGGATATTTT GCCAATCAAT CCGGTTGCAA AACTGCTAGC TAGCTTTGAA
GCAATGTTTG GGCAACTCTA TCTGGCGATC GTGATTGCTC GTTTGGTCAG TCTTTACAGC
AGTCAAAATT CGTCGGACTC CTAG
 
Protein sequence
MKWHFLRLSL ERPYNQLLFI LVAIISVGII FKINPIATIA VSFILFSSLL QVIKIARPSL 
QTSKSLLRFS LLTFSIIVIN ELGVLQPFPG LSEIFRFVTL IALSVFLSLV IILLIKTLMH
ESQVTADLVK GGICIYFLVA ILWSLLYEAI AVFDPLAFLI LPEHKDNNPY VYFSFITLTS
TGFGDILPIN PVAKLLASFE AMFGQLYLAI VIARLVSLYS SQNSSDS