Gene Synpcc7942_1033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1033 
Symbol 
ID3773963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1047992 
End bp1048948 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content49% 
IMG OID637799455 
Producthypothetical protein 
Protein accessionYP_400050 
Protein GI81299842 
COG category[S] Function unknown 
COG ID[COG2307] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.403724 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAGTC GTGTTGCTGA CTCTATCTAT TGGCTCAATC GCTATATCGA ACGGGCTGAG 
AATATTGCAC GTTTTGTCGA TGTCAACTTT AGCCTCAACC TCGATATCGG TTCGAGCACC
TCGCAACAGT GGGAACCCCT GATTGTCACC ACTGGCGATC ATGAACTCTT CCGCGATCGC
TATGGTGAGG CAACAGAGGA AAATGTGCTC AAATTTTTGA CCTTCGATCG CGATTACCCC
AACTCAATTT TCAGCTGCTT GGCTGCAGCA CGAGAAAATG CGCGTTCAAT TCGCGAGATC
ATCTCCTCTG AAATGTGGGA GCAAGTTAAC TCCTTCTACT GGATGATCAA AGACACTTCT
AGTCATGCGG GTGAGGTCGA TCTACCTCGT TTTTTTCAAG AGGTAAAATT ATCGAGCCAC
CTATTTGCTG GCGTGATGGA TGCTACCCTT TCCCACAATG AAGGCTGGCA CTTTGGACAT
CTCGGACGAA TGCTGGAACG AGCGGATAAA ACAGCTCGTA TTTTAGATGT GAAATACTTC
ATCTTGCTGC CCTCACCTCA GGATGTAGGG ACGTTGCTCG ATGAGTTGCA ATGGATTGCG
CTGCTCCGAT CGGCTAGCGC TTACGAAATG TTCCGAAAAC AGGGCAGACG CCGGATTACG
CCCTTGGGAG TGGCAGAATT CCTCATCCTC AATCCCATTT TTCCGCGATC GATTCGCCAT
TGCCTCGGCC GTGTCGAATC CTCTCTCCAT ACGATTTGTG GGACGCCCTC TGGAACTTGG
TCGAACTTGG CGCAACGGGC GATCGGGCGG CTCAGCGCTG AATTAGGCTA TTTAACAATG
GCTGAAATTT TTGAGATTGG CTTACATGAA TTTCTCGATG ATCTCGAACA AAAAATGAAC
CACGTTGATC AGCAAATTTT TGAGACCTTC TTCACGCTCG ATGCGATTGT GGCGTAA
 
Protein sequence
MLSRVADSIY WLNRYIERAE NIARFVDVNF SLNLDIGSST SQQWEPLIVT TGDHELFRDR 
YGEATEENVL KFLTFDRDYP NSIFSCLAAA RENARSIREI ISSEMWEQVN SFYWMIKDTS
SHAGEVDLPR FFQEVKLSSH LFAGVMDATL SHNEGWHFGH LGRMLERADK TARILDVKYF
ILLPSPQDVG TLLDELQWIA LLRSASAYEM FRKQGRRRIT PLGVAEFLIL NPIFPRSIRH
CLGRVESSLH TICGTPSGTW SNLAQRAIGR LSAELGYLTM AEIFEIGLHE FLDDLEQKMN
HVDQQIFETF FTLDAIVA