Gene Synpcc7942_0857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0857 
Symbol 
ID3774034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp855315 
End bp855821 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content50% 
IMG OID637799273 
ProductCheW protein 
Protein accessionYP_399874 
Protein GI81299666 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.201526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0222726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGTT CTCTCTCCTT TGAATTAACA AATACTGGAG CTGCTGATCA AACCACTCAG 
TCTTTTTTAA AGCTCAGGTT GAGTGATACT ACGATCGCGG TGATTCCGAC GGTTGAGGCT
CAAGAAGTCG TGATGGTCAC TCATCAACAG TTAACCTTGA TGCCCAACAT GCCCGGCACT
ATCTTGGGTT TACTCAATCA CCGCAACCGC GTGATTTGGG TCATCGATCT ACCGCAGTTG
CTGGGGTTAC CCATGCTGAT GCTGGATTTA CGGCAATACG CTGTTGTCGT CATCCAAGTA
GCGGGCCAAT TACTGGGGTT AGCCATTCAA CAAATTGAAG GGCTGAGCCG GCTTAATCCC
AGCGATATCC AATCTCCTGT CGGCTCCGTG GATGCCTCCT TGGTGCCTTT CTTGCGAGGC
TGCTACCTCC AAGATCAAGA GTTGTTGTTG GTCTTAGATG CTGCTGCGAT CGCCCATGCC
AAGAGCCTGC AGCCCCACGC TATTTAA
 
Protein sequence
MNSSLSFELT NTGAADQTTQ SFLKLRLSDT TIAVIPTVEA QEVVMVTHQQ LTLMPNMPGT 
ILGLLNHRNR VIWVIDLPQL LGLPMLMLDL RQYAVVVIQV AGQLLGLAIQ QIEGLSRLNP
SDIQSPVGSV DASLVPFLRG CYLQDQELLL VLDAAAIAHA KSLQPHAI