Gene Synpcc7942_0360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0360 
Symbol 
ID3774881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp353103 
End bp354299 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content59% 
IMG OID637798766 
Producthypothetical protein 
Protein accessionYP_399379 
Protein GI81299171 
COG category[S] Function unknown 
COG ID[COG4398] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.435591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.396986 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTGGA GTTGTGCTCT CTCAACCCGT CCTTCCTTGG AGCTTGCGCT GCAGGAAGTG 
GTGGCGCAGG CTTGTTCTGA CCTGTCTGTT GCGCCTGATC TAGGCCTGAT TTTCGTTTCA
GCCAGCTTTG CCAGCGATTT TCCACGGCTG CTGCCGCTGC TGCAGGAAAA ACTGCAAGTT
CCCCGTCTGC TGGGCTGTTG TGGCGGTGGC ATCGTCGGCA CTCAGCAGGG TACCGGCGTG
GAATGTGAGC AGCAACCCGC ACTGACGCTG TTGTTGGCCA GTCTACCCGG GGTGCGAGCA
ACACCCTTTC ACCTCAGCCC CGAGGCGCTG CCGGATCTCG ATAGTCCACC CCAAGCTTGG
ATTGAAGCGA TCGGGGTCAA TCCCAGCGAT GATCCTCAGT TCCTCCTGAT GGTCGATCCC
TTTAGCGCCA AGATTGAGGA TCTGCTGCAA GGGCTGGATT TCGCCTATCC CGAGGCCGTG
AAAGTGGGCG GATTGGCCAG TGGTTTGGGG GCAGAGTCAG CGATCGCCAG CTTGTTTTTT
CAAGACCGAC AGGTCGATGG CGTGATTGGG CTAGCCCTCA GTGGCAATGT CCAGCTGCAG
GCGATCGTGG CTCAGGGCTG TCGTCCAGTT GGCCCGCTTT GGCATGTGGC AGCGGCGGAG
CGCAACATTC TGCGGCAACT TCAGACCGAA GACGAGGAAC CGATCGCCGC GCTGCAAGCC
CTACAGTCAG TCCTGCGTGA TCTCTCCCCT GAATTACAGC GATCGCTCTG TGTGGGCCTG
GCCTGCAATT CTTTCCAAAC GGTATTACAA CCGGGCGACT TCCTGATCCG TAACCTGCTG
GGGTTTGATC CCCGCACTGG TGCTGTAGCA ATCGGCGATC GCATTCGAGT TGGGCAGCGG
CTGCAGCTGC ACGTACGGGA TGCCCAGACA GCGGCGGATG ACCTCGAGCG GCAACTGGGG
CAATGGTGCC GGCAGCATGC GACAAAACCA GCAGCTTCCC TCTTGTTTTC CTGCTTGGGG
CGCGGCAAGC CCTTCTATCA GCAGGCCAAC TTCGAGTCGC AACTGATTCA GCATTACCTC
TCAGAGCTGC CCCTAGCTGG CTTTTTCTGT AATGGCGAAA TCGGCCCGAT CGCTGGCAGC
ACCTACCTGC ATGGCTACAC ATCGGTGCTG GCTTTGCTGT CGGCCAAAAC TCACTAG
 
Protein sequence
MQWSCALSTR PSLELALQEV VAQACSDLSV APDLGLIFVS ASFASDFPRL LPLLQEKLQV 
PRLLGCCGGG IVGTQQGTGV ECEQQPALTL LLASLPGVRA TPFHLSPEAL PDLDSPPQAW
IEAIGVNPSD DPQFLLMVDP FSAKIEDLLQ GLDFAYPEAV KVGGLASGLG AESAIASLFF
QDRQVDGVIG LALSGNVQLQ AIVAQGCRPV GPLWHVAAAE RNILRQLQTE DEEPIAALQA
LQSVLRDLSP ELQRSLCVGL ACNSFQTVLQ PGDFLIRNLL GFDPRTGAVA IGDRIRVGQR
LQLHVRDAQT AADDLERQLG QWCRQHATKP AASLLFSCLG RGKPFYQQAN FESQLIQHYL
SELPLAGFFC NGEIGPIAGS TYLHGYTSVL ALLSAKTH