| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1520 |
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| Symbol | |
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| ID | 3743710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | - |
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| Start bp | 1470572 |
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| End bp | 1471513 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637771707 |
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| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_377522 |
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| Protein GI | 78185087 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.989243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGTCCA CAGCTTCTAA GCCGCTCGAG ACGCAGCGTC GCCGTAGTAG CGATCCTGTG
AGTTGGTATT TATCAACGAT CGGAAGGATC CCTCTGCTGA CGGCGGCAGA GGAAATTGAA
TTGGGGAATC AAGTGCAAGC CATGATGGCT TTCACGGAAG ATGGTTCGAA GGACTTCAAA
GTTGAAGACC TAACCACCAA ACAGCGGCGA ATGCTGCGTA TTGGTCGTCG AGCTAAAGAA
CGAATGATGA AGGCGAACCT TCGCCTTGTC GTCAGCGTTG CCAAGAAATA TCAGGGCAAA
GGCCTGGAGC TTTTGGATTT GATCCAGGAA GGATCGCTTG GCTTGGAACG GGCTGTTGAA
AAATTCGATC CCACCCGGGG ATACAAGTTT TCGACCTATG CCTTTTGGTG GATTCGGCAG
AGCATGACCA GGGCTATTGC TTGCCAGTCC CGCACGATCC GTCTCCCTGT TCATCTGAGC
GAACGACTCA CCACGATTCG CAAAGTCAGT CTGGATTTGG CCCACAAGCT CGGCGCCATG
CCCAACCGCT TGGAAATTGC GGAAGCGATG GACATCCCTG TGGAGGAACT TGATTCCCTC
TTGCGTCAGG CCCTCACCAC CAGCAGCCTC GATGCTCCGG TGAATGGAGA AGAAGGACGA
AGCTTCCTTG GGGACCTAAT TGCCGATTCG TCAGCGGACG AGCCCCTCGA CATCGTTGAG
CAGCGCATTC ATCACGAGCA ACTTGGCCGT TGGCTCAGTC ATCTCAGTGA GCAAGAGCAA
AATGTGCTTC GGCTTCGTTT TGGCTTAGAA GGCAACGAGC GTCACACGCT TGCCGAGATT
GGTCGAATGA TGGAAGTGTC CCGAGAGCGG GTCCGTCAGG TGGAGCTCAA GGCTCTTCGT
AAATTGCGCA ATCTCACCCG ACGTCTGCCA AGCGGAATTT GA
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| Protein sequence | MVSTASKPLE TQRRRSSDPV SWYLSTIGRI PLLTAAEEIE LGNQVQAMMA FTEDGSKDFK
VEDLTTKQRR MLRIGRRAKE RMMKANLRLV VSVAKKYQGK GLELLDLIQE GSLGLERAVE
KFDPTRGYKF STYAFWWIRQ SMTRAIACQS RTIRLPVHLS ERLTTIRKVS LDLAHKLGAM
PNRLEIAEAM DIPVEELDSL LRQALTTSSL DAPVNGEEGR SFLGDLIADS SADEPLDIVE
QRIHHEQLGR WLSHLSEQEQ NVLRLRFGLE GNERHTLAEI GRMMEVSRER VRQVELKALR
KLRNLTRRLP SGI
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