| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1301 |
|---|
| Symbol | dnaE |
|---|
| ID | 3742382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 1256502 |
|---|
| End bp | 1260020 |
|---|
| Gene Length | 3519 bp |
|---|
| Protein Length | 1172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637771483 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_377309 |
|---|
| Protein GI | 78184874 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.357557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTG TTCCCCTCCA CAACCACAGC GATTACAGCC TGCTTGACGG GGCCTCGCAG
TTGCCGTCGA TGGTGGAAAG GGCGAAGGAG CTGGGCATGC CCGCTATTGC GCTCACCGAT
CACGGTGTGA TGTATGGCGC GATCGAGCTG CTCAAGCTTT GTAAGGGAAC CGACCTAAAG
CCAATTATTG GCAACGAGAT GTATGTCATC AATGGTTCGA TTGATGATCC TCAGCCGAAA
AAAGAGAAGC GATATCACCT CGTTGTGTTG GCAAAGAATG CCATCGGGTA TCGCAATCTG
GTGAAGCTCA CCAGCATTAG TCATCTGCGT GGCATGCGGG GCCGTGGAAT CTTTTCCCGG
GCATGTGTCG ATAAAGATTT ACTCCAGCGT CACAGCGAAG GCCTCATCAT TGCCACGGCT
TGTCTCGGAG GAGAGATTCC CCAAGCGATT TTGAGAGGTC GTCCTGAAGT TGCCCGCGAT
GTTGCCCGCT GGTATCAAGA CGTTTTCGGA GAAGATTTTT ATCTAGAAAT CCAAGACCAC
GGATCTCCTG AAGACCGAAT TGTCAATTCC GAAATCGTCA AGATTGCCGA GGAACTCGAT
ATTCAATTGG TGGCGACAAA TGATGCCCAC TACCTCACGA AACAGGATGT GGAGGCGCAC
GATGCGCTCC TATGCGTACT AACCGGAAAG TTAATTAGCG ATGAAAAACG GCTTCGCTAC
ACCGGTACGG AATATATCAA GACAGAAGAA GAGATGGGCC GTTTATTTAC GGATCATCTA
GACCCTGATG TTGTCCAAAA GGCCATAACG AACACCGCCA AGGTGGCGGA GAAAGTTGAG
GACTACGACA TCCTCGGTAA GTACCAAATG CCTCGCTTCC CCATTCCCGA TGGGCACACG
GCAGTGACCT ATCTCCGTGA GGTGACGCTG CAGGGGTTGC GTGACCGACT GGAGCTCAAG
TCCGACGATC CAATCGCTGA AAACTATGCC GACCGGATGA GCCATGAGCT TGAAATCATG
GAACAGATGG GCTTCCCCAC CTACTTCCTC GTGGTTTGGG ATTACATCCG TTTTGCGCGA
GAGCAGAACA TCCCAGTGGG GCCTGGTCGG GGGTCTGCGG CGGGCTCCTT GGTGGCCTAC
GCCCTAGGGA TCACCAACAT CGACCCGGTG AGCAATGGCT TGCTGTTTGA ACGATTCCTC
AATCCAGAAC GGAAGTCGAT GCCTGACATC GACACCGATT TTTGTATCGA GCGTCGCTGT
GAAGTCATCG ATTACGTCAC TGAACGCTAC GGGGACGACA AAGTTGCCCA GATCATCACG
TTCAACCGGA TGACATCCAA GGCCGTCCTC AAGGATGTGG CCCGCGTGCT TGATATTCCC
TATGGAGATG CCGACCGCCT CGCCAAGTTG ATCCCTGTTG TGCGGGGTAA ACCGGCCAAA
TTGAAGGCCA TGATCGGAGA TGAGTCACCC AATCCCGAGT TCCGTGAGAA ATACCAGGGC
GACCCTGTGG TGAAACGCTG GGTTGATATG GCCATGCGGA TCGAAGGCAC CAACAAAACC
TTTGGTGTTC ATGCGGCCGG TGTTGTGATT GCTGCTGATC CCCTTGATCA ACTCGTGCCC
CTCCAGCGCA ACAACGATGG TCAGGTCATT ACTCAATACT TCATGGAAGA TGTTGAGTCG
ATGGGTTTGC TCAAGATGGA TTTTCTTGGG CTGAAAAACC TCACAATGAT CGACAAGACT
CTGGAACTTG TTGAAGTTAG TAGTGGTACA CGCATCGACC CCGACAAGCT TCCGCCCCAG
GATGCCGATA CATTTGCGTT GCTCGCTCGT GGTGATTTAG AGGGAATTTT TCAACTTGAA
TCGAGTGGCA TGCGTCAGAT CGTTCGAGAT CTGAAGCCCT CCTCCCTTGA GGATATTTCA
TCGATTTTGG CCCTCTATCG GCCTGGCCCA CTCGATGCCG GTTTGATTCC AAAATTTATT
AATCGAAAGC ATGGCCGCGA GGCGATTGAT TTCGCCCACG AGATCCTTGA GCCGATTCTG
AGTGAAACCT ACGGAATCAT GGTTTATCAG GAACAGATCA TGCGGATCGC GCAGGATCTA
GCGGGTTATT CCTTAGGTCA AGCTGATCTT CTGCGTCGGG CGATGGGTAA AAAGAAGGTA
TCGGAGATGC AAAAACACCG CGGCATATTT GTCGAGGGTG CGAAGAAGCG TGGCGTCGAT
GTGAAAGTTT CCGATGAACT CTTTGATCAG ATGGTTCTCT TTGCTGAGTA CTGCTTCAAC
AAGAGCCATT CCACTGCCTA TGGCGCGGTG ACCTATCAAA CGGCATACCT CAAGGCCCAC
TACCCAGTGG CCTACATGGC GGCTCTGCTC ACGGTGAATG CTGGCGCTGC CGACAAGGTG
CAGCGCTACA TCTCCAATTG CAATGCCATG GGGATTGAGG TGATGCCTCC AGATTTGAAT
GCCTCACTTA TCGACTTCAC TCCCAATGGC GATCGAATTT TGTTCGGCTT GTCGGCGGTT
CGAAATCTTG GGGATGGTGC GATCCGGCGT TTGATCGAAT CCCGTGAAAA TGATGGTCCG
TTCCGCTCCT TGGCAGATCT GTGTGATCGC CTGCCATCCA GCGTCTTGAA TCGCCGTGGC
TTGGAATCCT TAATCCATTG CGGAGCAATG GATGCCATGG ATCCGAATGC CAACCGGGCG
CAGTTGATGG CAGATCTTGA TCTGCTTTTG GATTGGGCCT CCTCTCGAGC AAAGGATCGA
GATAGTGGCC AGGGAAATCT CTTCGACCTT ATGGCTGCCC CTGCGGAGGA CGATGGTCCG
ACGGATCTCA GCATGGCTCC GAAGGCGGCG CCAGTTCCGG ACTACCCCCC CTCTGAAAAG
CTCAGATTGG AGAAAGATCT TGTTGGTTTT TATCTTTCAG ATCATCCACT GAAACAGCTC
ACTCCTTCAT CGCGTTTGTT GGCACCCATT GGCTTGGGTT CCTTAGAGGA GCAGCCGGAT
AAAGCCAAGG TTAGTGCGAT CACGATGATC ACTGAATTGC GTCAAGTAAC CACGCGAAAA
GGCGATCGAA TGGCCATTTT GCAACTTGAA GATCTCACCG GTAGCTGTGA AGCGGTTGTG
TTCCCCAAGA GTTATGCCCG ATTGGCCGAC CATCTGATGG CAGAAGCTCG CTTGCTCGTG
TGGGCTGGCG TCGATCGACG CGATGAACGC GTTCAGTTGA TCATTGACGA CTGTCGCGCC
ATTGATGACC TCACATTGCT CCTTGTTCAG CTTCCCTCTG ATCAGGCCAA TGACATCGCT
ATCCAACACA AATTACGTGA ATGTTTGACG CAACATCGTC CTGAGCGCGA TGAGTTAGGC
GTGAAAGTTC CAGTAGTGGC TGAGGTTTGT CTTGGAGACT CGGTCCGTTA TGTGCGGCTT
GGTGCACAAT TCTGTGTTCG AGATCCCATC GCTGCTGTGC AAGCGTTGAA TGATCAGTCG
TTTACAGCGC GTTGTAGTGA TCGGCTTGTG TTGGGCTGA
|
|---|
| Protein sequence | MAFVPLHNHS DYSLLDGASQ LPSMVERAKE LGMPAIALTD HGVMYGAIEL LKLCKGTDLK
PIIGNEMYVI NGSIDDPQPK KEKRYHLVVL AKNAIGYRNL VKLTSISHLR GMRGRGIFSR
ACVDKDLLQR HSEGLIIATA CLGGEIPQAI LRGRPEVARD VARWYQDVFG EDFYLEIQDH
GSPEDRIVNS EIVKIAEELD IQLVATNDAH YLTKQDVEAH DALLCVLTGK LISDEKRLRY
TGTEYIKTEE EMGRLFTDHL DPDVVQKAIT NTAKVAEKVE DYDILGKYQM PRFPIPDGHT
AVTYLREVTL QGLRDRLELK SDDPIAENYA DRMSHELEIM EQMGFPTYFL VVWDYIRFAR
EQNIPVGPGR GSAAGSLVAY ALGITNIDPV SNGLLFERFL NPERKSMPDI DTDFCIERRC
EVIDYVTERY GDDKVAQIIT FNRMTSKAVL KDVARVLDIP YGDADRLAKL IPVVRGKPAK
LKAMIGDESP NPEFREKYQG DPVVKRWVDM AMRIEGTNKT FGVHAAGVVI AADPLDQLVP
LQRNNDGQVI TQYFMEDVES MGLLKMDFLG LKNLTMIDKT LELVEVSSGT RIDPDKLPPQ
DADTFALLAR GDLEGIFQLE SSGMRQIVRD LKPSSLEDIS SILALYRPGP LDAGLIPKFI
NRKHGREAID FAHEILEPIL SETYGIMVYQ EQIMRIAQDL AGYSLGQADL LRRAMGKKKV
SEMQKHRGIF VEGAKKRGVD VKVSDELFDQ MVLFAEYCFN KSHSTAYGAV TYQTAYLKAH
YPVAYMAALL TVNAGAADKV QRYISNCNAM GIEVMPPDLN ASLIDFTPNG DRILFGLSAV
RNLGDGAIRR LIESRENDGP FRSLADLCDR LPSSVLNRRG LESLIHCGAM DAMDPNANRA
QLMADLDLLL DWASSRAKDR DSGQGNLFDL MAAPAEDDGP TDLSMAPKAA PVPDYPPSEK
LRLEKDLVGF YLSDHPLKQL TPSSRLLAPI GLGSLEEQPD KAKVSAITMI TELRQVTTRK
GDRMAILQLE DLTGSCEAVV FPKSYARLAD HLMAEARLLV WAGVDRRDER VQLIIDDCRA
IDDLTLLLVQ LPSDQANDIA IQHKLRECLT QHRPERDELG VKVPVVAEVC LGDSVRYVRL
GAQFCVRDPI AAVQALNDQS FTARCSDRLV LG
|
|---|
| |