Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_0409 |
Symbol | def |
ID | 3742393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | + |
Start bp | 425643 |
End bp | 426248 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637770580 |
Product | peptide deformylase |
Protein accession | YP_376423 |
Protein GI | 78183988 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCGGGAA GCTTTGCGCA GTTGGCACGG GCGGCTGACA AGGCCAGGGA CACGATGTTG GTGCCGAAGA CGGCCCTGGA AACCCCTCCG CTAGAGATCC ATACCCTTGG TGCTGATGCG TTGCGTCAGC CTGCTCAGCG GATCGGCAAG GTGAACGATC AAGTGCGAGA ACTGGCCCGA GACATGCTGC GCAGCATGTA TACCGCCAAG GGCATCGGAT TGGCCGCTCC TCAAGTTGCT GTTTATCAGC AGCTTTTGGT GATTGATCTT GACCTGGAAA ACGCAGCGAC GCCCCCTCTG GTGCTGATTA ATCCAGAGAT CACGGCCGCA AGCGCTGGTT TGGACACCTA TGAGGAAGGC TGCCTCAGCA TCCCTGGGGT GTATCTCGAT GTGGTGCGTC CCACTGCCAT CGAATTGAGT TATCGCGATG AGATGGGTCG GCCACGAAAA ATGAAAGCCG ATGGATTAAT GGCCCGTTGT ATTCAGCATG AGATGGACCA TCTCAATGGT GTTTTATTTG TGGATCGGGT GACGGATCAA GCCGGCCTTC AGAAAGAATT AAAGGAAAAT GGGTTCCAGT CCAAGCATGT CCAAAGCGTG TCCTGA
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Protein sequence | MAGSFAQLAR AADKARDTML VPKTALETPP LEIHTLGADA LRQPAQRIGK VNDQVRELAR DMLRSMYTAK GIGLAAPQVA VYQQLLVIDL DLENAATPPL VLINPEITAA SAGLDTYEEG CLSIPGVYLD VVRPTAIELS YRDEMGRPRK MKADGLMARC IQHEMDHLNG VLFVDRVTDQ AGLQKELKEN GFQSKHVQSV S
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