| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0390 |
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| Symbol | |
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| ID | 3742826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 405007 |
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| End bp | 408465 |
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| Gene Length | 3459 bp |
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| Protein Length | 1152 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637770561 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_376404 |
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| Protein GI | 78183969 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.396988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGCTT CTAATAATTT CATCACCAGG CCTGTTCTTA GTACGGTCTG CAGTCTTCTG
ATTGTGATCG TCGGCCTGAT CGCAATTCCA ATTCTCCCGA TTGAAAACCT GCCGGATATC
GCGCCGCCCA CCGTGAAGGT GCAGTCCACC TATGTGGGAG CAGATGCCGT TGCTGTTGAG
CAAGGTGTCA CCTCTGTGCT GGAGCAGCAG ATCAACGGTG TGGAAAAGAT GGATTACATC
ACATCCACGA GCTCATCTGA TGGTGTGAGT TCTATTTCAG TGTCATTTGA CAGTGGAACC
GATGGAAATA TCAATCAAGT GAATGTGCAA AATCGGGTGT CTTTGGCGGA GCCCCAACTG
CCGGAAGAAG TGAGAAAATC AGGGGTTACT GTTAATAAAG CATCAAATTC AATTCTGCTT
GTTTATAATT TTGTCAACGA AAATCCAGAC CAAGCTCAGT ATTCTGTTGA GACGATCAGT
GGTTATCTTG ATAAAAATCT AACGGACAAT GTTAAGAGAG TAAAAGGAGT TGGTGACGTT
ACCTATTTTG GTAATCGCAA GATTGCTTTT CGTCTTTGGC TTGATCCTGA CAAATTGGCG
GCGAACAATC TCTCTGCCAT AGACATTGTT AATCAATTAA AGAGTCAAAA CCGATTGGTT
CCTGCTGGAA AGATCGGTGG ATCCCCTGCC CCTGAAGGCC AAGAGTTCAC CTTTACTGTG
CAGCTTCAGG GCCGTTTAAC CACTACCCAG GAATTTGAAA ATATTGTTCT TCGTTCTACA
GGTGACGGTG GACTTGTCCG TTTGAAAGAT GTTGGCCGCG TTGAACTTGG TGGTGAAACC
TATGGTATCG ACGCTATGGA TATCAATGGA ACACCTTCTG TTGGTATTGC TATTTATCAG
CTTTCGGGAA GTAACGCGAT TGAAGTTTCC AATGGAGTGA AAGATGTATT GGAAGAGTTT
GAGAAAACTC TTCCAGTAGG CCTTGGTGTG CAGAAGATCT ACGACACAAC CGACTTCATT
AGTCAGTCGA TCAAAGGCGT GACGAATTCC CTGCGGGATG CCGTGATTCT GGTGGTGTTG
ATCCTGTTCC TGTTTTTGCA GAACTGGAAG GCAACACTTG TTCCCGCCAT TGCGATTCCA
GTGGCCTTGA TCGGAACGTT CGCCTTGGTT CTTGCCTTTG GCTTCTCGCT AAACCAGCTC
ACCTTGTTTG GTTTGGTTCT CGCGACTGGC TTGGTGGTGG ACGACGCCAT CACCGTTGTG
GAAGATACCT CTGCAAAAAA AGCGGAGGGT ATGACGTCGG TCCAGGCCGC CATCGAAACG
ATGGATGAGT TGTTTGGCGC CGTAATTGCT ACGTCGTTGG TAAAGATGGC AGTGTTTTTG
CCAGTGTTGT TTTTCCCAGG TGCGACGGGA ACAATTTACA AACAGTTCGC TGCAACGATT
TTATTTTCGA TCGGTATTTC CACATTTAAC GCCCTCACAT TCTCTCCAAT GTTGTCGGCG
TTGTTGTTGT CGCGTGAAAC AAAGGAGCTC ACACGTCATC AGTACGCAAT CGCTGGGGTC
ACGCTGGGCT TTGTGTATGG CCTCTTAAGT GCTGGTAATG GTGCAATCGC TGCCTTAATT
CCCATGGCAG TGGGTGCATT GGTTGGTTTT ATCGCCTCAA AAATCACGGG GCTTCCATTG
CGGCTTCCCG TTGCAGCTGG TGGGGCAGCC GTTGGGTTGA TGTCCACTGG GGTGATTGTC
TCCAGTCCAA TTCCCGTGGT GTTGTTCACT GTGATCGGTT TTGTGGTGGG AGGCTTTGTG
CCGGTGATTT TCACCAATTT CAATCGCTTT TACAGCGGAT TTGAGAAGCG TTACGCCACG
GTGCTCGACA TGGTTCTCAA GGCACGTCCC ATCGTGATGG CTGCCTTGGG TGTTGGCATT
TTGCTGACAG GTTTTGCCTT CACGCGCATT CCTGGTGGCT TTGTACCGAT TGAGGATCAG
GGCTATGCCA TCGGATTTGT TCAAGCACCT GATGGTGTTT CAAACGAAAA AACTTTGGCG
ATCAATCGCC AAGTTGCTGA GGTAATGCGC TCCGAAGAGG ATATTTCATC TGCTGCATTA
TTTAGTGGTG CCAGTCTTGA TGGCAACGCT CCAAATAAGG GCCTTTTCTT TATCGGCATG
AAGCACTGGG ATGAAAGGCC TGGAAAGGAC CATTCCGTAG CCGCCATTGT GAAGCGCCTC
AATCAGAAAA TGTATGGAGC TATTGATGCA GGACGGGTTT TTGTTGTGGA GCCTCCCTCC
ATTCCTGGAT ATGGCACGGG TGGTGGATTT GAGTTCCAGC TTCTCGACCA GAGCAGTGGT
GTTTACTCAC TGAATGAATT CTTTGGCACA GCCCAACAGA TCATGCAGGC GGGCAATAGC
AATCCGATTT TGAGTCGGGT CTATTCACTC TTCTCCCCGC AGGCTCCTCA ATACAAAATT
GATGTAGACC GCGACCAGAT GGCTTCTGTC GGTGTCGACT TTGGAACGGC CATGTCGGCC
TTCAGTGTCA ATTTTGGTGG GGCCTATGTG AATGACACAT TCCAGGAGGG CAAAGTGCGT
CGCGTCTATG TCCAGGCGAA CGATGTCAGC CGGGCGACTC CCCAAAAGCT GTCGTCGATT
TATGTCGGCA ATAGCAAAGG CGAGCAGGTT CCGTTGTCTG AGTTCTTCAC CGTGAAGCAG
ACCGTGGGTC CAAGTGTGAT TCCCCACTTC AATCTGTATC GCTCCATCAA GGTGGAAGGA
ACACCGAATG CGGGTAATAG TTCTGGCCAG GCGATTGGTG CCATGAAGCA GATCTTTAAC
CAGGGAAATT TCCAGGGCTT GGGCTTCGAC TGGACCGGTA TTTCTAGAGA GGAAGTGAAA
GCTGGTTCCC TGGCAGTCGT GATCTTTGCC CTTGGAATCT TGGCGGTGTT CTTGGTTCTT
TCAGCGCAAT ACGAGAGCTA CAGCGATCCA ATCATCATCT TGCTCACGGT GCCCACAGCT
TTGCTCGGTG CCCTTGTGTT CCTCGGTGCT GCAGGACAGG TTCTCAATAT TTATGCACAA
GTTGGTTTGG TGATGTTGAT CGGACTTGCT GGCGGTAATG CCATTTTGAT CGTGGATCTG
GCCAATCAAA AAATGGGTGA AGGAGAGTCG GCCTTAGAAG CGGCGAAGTT CTCGGCGAAG
TCACGACTCA GACCAATTTT GATGACGGCC ATCTCCTCCC TCACAGGCTT CCTCCCTTTG
ATGTTGGCCA GTGGTGCCGG TGCTCAAAGT CAGTCGTCCT TGGGTTTGGT GGTGTTTGGC
GGATTGTTGG TGGCCACATT CCTATCCACC CTTGTTGTTC CCGTGTTTTA CGTGGTGATG
AAATCCCTTC TCGGGCAGGC CGATGCCAAA CCTCCCGAAG GAGGTGATGG CGATGGTGGC
CAGACCGTTC AGGTTCAATC CACTCCCTTG CCCAGCTAA
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| Protein sequence | MSASNNFITR PVLSTVCSLL IVIVGLIAIP ILPIENLPDI APPTVKVQST YVGADAVAVE
QGVTSVLEQQ INGVEKMDYI TSTSSSDGVS SISVSFDSGT DGNINQVNVQ NRVSLAEPQL
PEEVRKSGVT VNKASNSILL VYNFVNENPD QAQYSVETIS GYLDKNLTDN VKRVKGVGDV
TYFGNRKIAF RLWLDPDKLA ANNLSAIDIV NQLKSQNRLV PAGKIGGSPA PEGQEFTFTV
QLQGRLTTTQ EFENIVLRST GDGGLVRLKD VGRVELGGET YGIDAMDING TPSVGIAIYQ
LSGSNAIEVS NGVKDVLEEF EKTLPVGLGV QKIYDTTDFI SQSIKGVTNS LRDAVILVVL
ILFLFLQNWK ATLVPAIAIP VALIGTFALV LAFGFSLNQL TLFGLVLATG LVVDDAITVV
EDTSAKKAEG MTSVQAAIET MDELFGAVIA TSLVKMAVFL PVLFFPGATG TIYKQFAATI
LFSIGISTFN ALTFSPMLSA LLLSRETKEL TRHQYAIAGV TLGFVYGLLS AGNGAIAALI
PMAVGALVGF IASKITGLPL RLPVAAGGAA VGLMSTGVIV SSPIPVVLFT VIGFVVGGFV
PVIFTNFNRF YSGFEKRYAT VLDMVLKARP IVMAALGVGI LLTGFAFTRI PGGFVPIEDQ
GYAIGFVQAP DGVSNEKTLA INRQVAEVMR SEEDISSAAL FSGASLDGNA PNKGLFFIGM
KHWDERPGKD HSVAAIVKRL NQKMYGAIDA GRVFVVEPPS IPGYGTGGGF EFQLLDQSSG
VYSLNEFFGT AQQIMQAGNS NPILSRVYSL FSPQAPQYKI DVDRDQMASV GVDFGTAMSA
FSVNFGGAYV NDTFQEGKVR RVYVQANDVS RATPQKLSSI YVGNSKGEQV PLSEFFTVKQ
TVGPSVIPHF NLYRSIKVEG TPNAGNSSGQ AIGAMKQIFN QGNFQGLGFD WTGISREEVK
AGSLAVVIFA LGILAVFLVL SAQYESYSDP IIILLTVPTA LLGALVFLGA AGQVLNIYAQ
VGLVMLIGLA GGNAILIVDL ANQKMGEGES ALEAAKFSAK SRLRPILMTA ISSLTGFLPL
MLASGAGAQS QSSLGLVVFG GLLVATFLST LVVPVFYVVM KSLLGQADAK PPEGGDGDGG
QTVQVQSTPL PS
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