| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_2302 |
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| Symbol | |
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| ID | 3737773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | - |
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| Start bp | 2105684 |
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| End bp | 2109106 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637776884 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_382589 |
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| Protein GI | 78213810 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.875281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.219431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCTT CCAACAATTT CATCACCCGG CCTGTTCTCA GCACGGTCTG CAGTCTGCTG
ATCGTGATCG TCGGCTTGAT CGCGATTCCG ATCCTGCCGA TCGAAAACCT TCCTGATATT
GCTCCTCCCA CGGTGAAGGT GCAGGCCACC TATGTGGGTG CCGATGCGGT TGCTGTTGAG
CAGGGGGTGA CCTCCGTGCT CGAGCAGCAG ATCAACGGGG TGGAGAACAT GGACTTCATC
ACCTCCAACA GCTCGTCGGA CGGTGTGAGT TCGATCTCCG TGTCGTTCGA CAGTGGCACC
GACGGCAACA TCAACCAGGT GAATGTGCAG AACCGCGTCT CCCTGGCAGA ACCTCAGCTT
CCGGAGGAGG TGCGCAAGTC GGGTGTGACG GTGAACAAGG CCTCCAACTC GATCCTGCTC
GTCTACAACT TCGTCAACGA AGACCCCTCC AAGACCGAAT ACTCGGTGGA GACGATCAGT
GGTTACCTCG ATAAAAACCT CACCGACAAC GTCAAGCGGG TGAAGGGCGT CGGCGATGTC
ACCTACTTCG GCAACCGCAA GATCGCCTTC CGCCTTTGGC TGGACCCCGA GAAGCTGACC
GCCAACAACC TCACGGCCAC CGATGTGGTC AACCAGCTGC GAAGTCAGAA CCGTCTGGTG
CCTGCCGGCA AAATCGGCGG CGCCCCTGCC CCTGAAGGTC AGGAATACAC CTTCACGGTG
CAGCTGCAGG GACGTCTTAC CAGCATCCAG GAGTTCGAAA ACATCATTCT CAGAACCACT
GATGCCGGTG GCTTGGTGCG GCTCAAGGAT GTGGGCCGCG TTGAGCTCGG CGGTGAGACC
TACGGCATTG ATGCCATGGA TCTCAAAGGC ACACCTTCCG TTGGCATCGC GATTTACCAG
CTCTCCGGAA GCAATGCCAT CGAGGTCTCC AATGGCGTCA AGGAAGTGCT CAATGAGTTC
GAGCAAACCC TGCCGGTTGG CCTCGGGGTC CAGAAGATTT ACGACACCAC CGACTTCATC
AATCAGTCGA TCAAAGGTGT GACCAACTCC CTTCGGGACG CAGTGATCCT GGTGGTGCTG
ATCCTGTTCC TGTTCTTGCA GAACTGGAAA GCCACGTTGG TTCCGGCCAT TGCGATTCCG
GTGGCCTTGA TCGGCACTTT TGCCCTCGTG CTGGCCTTCG GTTTCTCCCT CAACCAGCTC
ACGCTGTTTG GTCTTGTGCT GGCCACTGGC CTTGTGGTGG ATGACGCCAT CACCGTGGTG
GAAGACACCT CCGCCAAGAA GGCGGAAGGG ATGACCTCGG TGCAGGCCGC CATGGAAACC
ATGGATGAGC TGTTCGGGGC TGTGATCGCC ACCTCCCTGG TGAAGATGGC GGTGTTCCTG
CCGGTGCTGT TTTTCCCGGG TGCCACCGGA ACGATCTACA AGCAGTTCGC CGCCACGATC
CTTTTCTCGA TCGGCATCTC CACGTTCAAC GCCCTTACCT TCTCGCCGAT GCTGTCGGCC
CTGCTGTTGT CTCGCGAGAC CAAGGAGCTC AGCCGCAATC AGTACGCCAC GGCCGGCGTG
GTGCTTGGTT TCATTTACGG CTTGCTCAGT GCTGGCAACG GAGCGGCAGC AGCGTTGATC
CCAACGGTGA TCGGTGCGTT GGTCGGCTTC TTCGCGGGCA AGATCAGCGG TCTGCCCCTG
CGTCTTCCCT TCACCGCTGG TGGTGCTGCG GTGGGTGTGA TCACCACAGG GGTGATCATC
TCCAATCCGA TTCCGGTGGT GTTGTTCACC GCCATTGGAG GAGTCGTTGG CTACTTCATC
CCGGTGATCT TCACCAACTT CAATCGTTTG TATGGCGGCT TTGAGAAGCG CTATGCCTCG
ATCCTCAACG CCGTGCTCAA AGCCCGTCCG ATTGTGATGG CGGCCCTGGC GGCCGGCATT
CTGCTGACGG GATTCGCCTT CACCCGCATT CCAGGTGGAT TCGTGCCGAT CGAAGACCAG
GGCTATGCCA TTGGTTTCGT GCAGGCTCCT GAGGGTGTCT CCAACGAGAA AACACTGGCG
ATCAACCGTC AGGTGGCGGA GGTGTTGCGC TCCGAGGAGG ACATCGCCTC AGCCGCCCTG
TTCAGCGGCG CCAGCCTCGA TGGCAACGCG CCCAACAAGG GTCTGTTCTT CATCGGGATG
AACCACTGGG ATGATCGGCC CGGCAAGGAC CACACCGTGG GAGCGGTGGT GAAGCGTCTC
AACGCCAAGT TGTACAGCGC GATTGATGGG GGTCGGGTGT TTGTTGTTGA GCCCCCGTCG
ATTCCCGGTT ATGGCACCGG TGGTGGCTTC GAGTTCCAGC TGCTCGACCA GAGCAGCGGC
GTCTATTCGT TGAATGAGTT TTTCGGATCT GCTCAGCAGA TCATTCAGAC GGCGAACAGC
GATTCCGTTC TCAATCAGGT TTACACGCTG TTCTCCCCCC AGGCTCCGCA ATACAAGATT
GATGTGGACC GGGAGCAGAT GGCTTCGCTC GGTGTCGATT TCGCCTCCGC GATGTCTGTT
TTCAGCGTCA ACTTCGGTGG GCAATACGTG AATGACACCT TCCAGGAGGG CAAGGTGCGC
AGGGTGTATG TGCAGGCCGA TGAGGTCAGC CGGGCCACTC CCCAGCGGCT GTCGGCCATC
TACGTCGCCA ATGCCAAGGG GGAGCAGATT CCCCTCTCCG AGTTCTTCAC CGTGAAGCAG
ACGGTGGGGC CCAGCGTCAT TCCCCACTTC AACCTTTACC GCTCGATCAA GATCGACGGC
ACCCCCAAAG AAGGCAACAG CTCCGGTCAG GCGATCGGGG CGATGAAGCA GATTTTCAAT
GCGGGCAGTT ACCAGGGTCT TGGGTTCGAC TGGACCGGTA TCTCCCGCGA AGAGGTGAAA
GCCGGATCCC TGGCGGTGGT GATCTTCGCG CTCGGCATCC TGGCGGTGTT CCTGGTGCTG
TCGGCTCAGT ACGAGAGTTA CACGGACCCG ATCATCATCC TGCTGACGGT GCCGACGGCG
TTGCTGGGGG CCCTGGTGTT CCTCGGCGGT GCCGGCCAGG TGCTCAACAT CTACGCCCAG
GTGGGCCTTG TGATGCTGAT CGGTCTGGCA GGAGGTAACG CGATTCTGAT CGTCGACCTG
GCCAATCAGA AGATGGGTGA GGGCGAGTCG GCGCTGGAGG CTGCCAAGTT CTCCGCCAAG
TCGCGTTTGC GGCCGATTCT GATGACGGCG ATCTCTTCCC TCACCGGCTT CCTGCCCCTG
ATGCTGGCCA GTGGTGCTGG AGCTCAGAGT CAGTCGTCCC TGGGTCTGGT GGTGTTCGGT
GGTCTTTTGG TGGCCACCTT CCTCTCCACC CTTGTGGTTC CTGTCTTCTA CGTCGTGATG
AAGACGTTGC TGGGAGAGGC CGATGCAAAG CCTCCCGAGG ACGGTCCTAC CCCCACCCCG
TAA
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| Protein sequence | MSASNNFITR PVLSTVCSLL IVIVGLIAIP ILPIENLPDI APPTVKVQAT YVGADAVAVE
QGVTSVLEQQ INGVENMDFI TSNSSSDGVS SISVSFDSGT DGNINQVNVQ NRVSLAEPQL
PEEVRKSGVT VNKASNSILL VYNFVNEDPS KTEYSVETIS GYLDKNLTDN VKRVKGVGDV
TYFGNRKIAF RLWLDPEKLT ANNLTATDVV NQLRSQNRLV PAGKIGGAPA PEGQEYTFTV
QLQGRLTSIQ EFENIILRTT DAGGLVRLKD VGRVELGGET YGIDAMDLKG TPSVGIAIYQ
LSGSNAIEVS NGVKEVLNEF EQTLPVGLGV QKIYDTTDFI NQSIKGVTNS LRDAVILVVL
ILFLFLQNWK ATLVPAIAIP VALIGTFALV LAFGFSLNQL TLFGLVLATG LVVDDAITVV
EDTSAKKAEG MTSVQAAMET MDELFGAVIA TSLVKMAVFL PVLFFPGATG TIYKQFAATI
LFSIGISTFN ALTFSPMLSA LLLSRETKEL SRNQYATAGV VLGFIYGLLS AGNGAAAALI
PTVIGALVGF FAGKISGLPL RLPFTAGGAA VGVITTGVII SNPIPVVLFT AIGGVVGYFI
PVIFTNFNRL YGGFEKRYAS ILNAVLKARP IVMAALAAGI LLTGFAFTRI PGGFVPIEDQ
GYAIGFVQAP EGVSNEKTLA INRQVAEVLR SEEDIASAAL FSGASLDGNA PNKGLFFIGM
NHWDDRPGKD HTVGAVVKRL NAKLYSAIDG GRVFVVEPPS IPGYGTGGGF EFQLLDQSSG
VYSLNEFFGS AQQIIQTANS DSVLNQVYTL FSPQAPQYKI DVDREQMASL GVDFASAMSV
FSVNFGGQYV NDTFQEGKVR RVYVQADEVS RATPQRLSAI YVANAKGEQI PLSEFFTVKQ
TVGPSVIPHF NLYRSIKIDG TPKEGNSSGQ AIGAMKQIFN AGSYQGLGFD WTGISREEVK
AGSLAVVIFA LGILAVFLVL SAQYESYTDP IIILLTVPTA LLGALVFLGG AGQVLNIYAQ
VGLVMLIGLA GGNAILIVDL ANQKMGEGES ALEAAKFSAK SRLRPILMTA ISSLTGFLPL
MLASGAGAQS QSSLGLVVFG GLLVATFLST LVVPVFYVVM KTLLGEADAK PPEDGPTPTP
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