| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_1965 |
|---|
| Symbol | |
|---|
| ID | 3735657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | + |
|---|
| Start bp | 1783879 |
|---|
| End bp | 1785045 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637776550 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_382261 |
|---|
| Protein GI | 78213482 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.455875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGT CCTTGCGCTC CCCTGCGTCC CCATCGCCTG AAGCAGAGCT GGCCTCAGTG
GCGAAGGCAC AATCCAAACG ACCCAAAGCC GCGATGGTCG GATTGCTGGT GTTGGTCCTG
TGCGGTGGTG GGCTACTGCT GCGTTTCGGA CCCTGGAGCA ACCGCCAACG GGATCTGACA
CCCTTCACCA CCACTGCAGA ACGTGGCGTT CTCTCTGGGG TGATCACCGC CAGCGGCGAA
CTGCAGGCCC AGCAGAAGGT GAACGTGAGT CCGCGCAAGC AAGGTCTGCT GGCTGAGCTG
AAGGTGGATG AAGGAGATGT GGTGGAGAAC GGACAGGTTC TGGCCTTGAT GAATCGTGGC
GATCTCGATG ATCGGCTGCA GGAGAAGCGG GCTCTGCTGC GCCAGGCCGA AGCCAATTAT
CAGAACAAGC GGGAGGATTT CGAACGACGC AGCCAGCTGT ATGCCAGCGG CGCGCTCAGC
GCTGACGACT TCAGTGATGC GCGCTTCGAG ATGCTGGCTG GGCAAGCGGG CCTCGTTGCA
GCCCGGGAAC GGGTGGAGCA ACTGGAACAG GAGAGTCGAG AAAAGACGAT CCGCGCCCCC
TTCTCAGGAA CGATCACAGC GCGCTACGCC GAACCGGGGT CGTTTGTGAC CCCCACCACT
GCCGCCTCGG CCACGGCCGG TGCCACAAGC TCTTCGATCG TTGAACTCTC GCAAGCCCTG
GAGGTGAGGG CCCGCGTTCC GGAAAGCGAC ATCGGCCGCA TCGCGACCGG CCAGAAGGCC
GAAATCCGGG TAGATGCCTA TCCCGATGAG CGCTTCCAGG CAAGGGTGAA TGAAATTGCC
CCCCGCGCAG CCAAAGAGAA CAGCGTCACC TCCTTCGAAG TGAAGCTGAA CTTCGTCAAC
CCGCAAAACA AATTGAAGAT CGGCATGACT GCCGACATCA ATTTCCTAAC CGGGCGTAGT
GACCCCAAAA TCCTTGTGCC CACGGTGGCG ATCACCCTGG AGGACGGCCA ACAGGGTGTG
TTGCTGGTGG ATGAGAACCA GCAACCACGT TTCCAGCCGG TGGAACTGGG CAACAGCAGC
GGCGACCAGA CTGCGATCCT GAACGGTCTC GAATCAGGAA CTCGCGTGTT CATCGATCTG
CCCCCCTGGG CAGACCCGCG CGATTGA
|
|---|
| Protein sequence | MLQSLRSPAS PSPEAELASV AKAQSKRPKA AMVGLLVLVL CGGGLLLRFG PWSNRQRDLT
PFTTTAERGV LSGVITASGE LQAQQKVNVS PRKQGLLAEL KVDEGDVVEN GQVLALMNRG
DLDDRLQEKR ALLRQAEANY QNKREDFERR SQLYASGALS ADDFSDARFE MLAGQAGLVA
ARERVEQLEQ ESREKTIRAP FSGTITARYA EPGSFVTPTT AASATAGATS SSIVELSQAL
EVRARVPESD IGRIATGQKA EIRVDAYPDE RFQARVNEIA PRAAKENSVT SFEVKLNFVN
PQNKLKIGMT ADINFLTGRS DPKILVPTVA ITLEDGQQGV LLVDENQQPR FQPVELGNSS
GDQTAILNGL ESGTRVFIDL PPWADPRD
|
|---|
| |