| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_0879 |
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| Symbol | |
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| ID | 3736348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | + |
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| Start bp | 849184 |
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| End bp | 850122 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637775479 |
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| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_381202 |
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| Protein GI | 78212423 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.253723 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCACAG CTTCCAAGCC GCTGGAGACG CAACGTCGGC GCAGCAGCGA CCCCGTCAGT
TGGTATCTCG CCACCATCGG CAGAATTCCA CTGCTGACCC CAGCCGAAGA AATCGAGCTG
GGCAATCAGG TGCAGGCGAT GATGGCCTTC ACCGAAGACG GTTCCCGTGA AATCGAGGAT
GGAGAACTCA CCACGGCACA GCGCCGTCTC CTGAGGATCG GTCGCCGCGC CAAAGAGCGG
ATGATGAAGG CCAATCTTCG TCTTGTGGTC AGCGTCGCCA AGAAATATCA AGGCAAGGGT
CTGGAGTTGC TCGATCTGAT TCAGGAGGGC TCCCTCGGCC TCGAGCGTGC TGTTGAGAAA
TTTGATCCCA CTCGCGGTTA CAAGTTTTCC ACCTATGCCT TCTGGTGGAT CCGCCAGAGC
ATGACCCGGG CCATTGCCTG CCAGTCGCGC ACGATTCGTC TTCCCGTTCA TCTCAGTGAG
CGGCTCACCA CGATTCGCAA GGTCAGTCTT GATCTGGCCC ACAAGCTCGG CGCCATGCCC
AGCCGTGTGG AGATCGCTGA AGCGATGGAT ATCCCCTTGG ATGAGCTCGA TTCGCTGCTG
CGCCAGGCGC TCACCACCAG CAGCCTGGAT GCTCCCGTCA ACGGTGAGGA GGGGCGCAGC
TTCCTTGGGG ATCTAATCGC TGATTCATCC CTCGATGAAC CGCTCGACAT CGTTGAACAG
CGGATTCATC ACGAGCAGCT GGGCCGCTGG CTGAGTCACC TGAGCGAGCA GGAGCAGCAC
GTTCTGCGCA TGCGCTTCGG GCTTGAGGGC AACGAGCGTC ACACGCTTGC TGAAATTGGA
CGCCTGATGG AGGTGTCCCG CGAGCGGGTG CGTCAGGTTG AACTCAAGGC GCTGCGGAAG
TTGCGCAACC TCACCCGACG ACTTCCGAGC GGCATCTGA
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| Protein sequence | MSTASKPLET QRRRSSDPVS WYLATIGRIP LLTPAEEIEL GNQVQAMMAF TEDGSREIED
GELTTAQRRL LRIGRRAKER MMKANLRLVV SVAKKYQGKG LELLDLIQEG SLGLERAVEK
FDPTRGYKFS TYAFWWIRQS MTRAIACQSR TIRLPVHLSE RLTTIRKVSL DLAHKLGAMP
SRVEIAEAMD IPLDELDSLL RQALTTSSLD APVNGEEGRS FLGDLIADSS LDEPLDIVEQ
RIHHEQLGRW LSHLSEQEQH VLRMRFGLEG NERHTLAEIG RLMEVSRERV RQVELKALRK
LRNLTRRLPS GI
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