| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4834 |
|---|
| Symbol | |
|---|
| ID | 6119211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5821146 |
|---|
| End bp | 5822411 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641636415 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001763178 |
|---|
| Protein GI | 170729152 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATCAAG AACTAAGATT GCGGATCTCA AAGTGGTTAT CCGACTGGGG AGTTAACAGC
ACACCATCGG ACGATGTGTC AACTTCATTG CTTGTCGTGG TGAGCCTTGT GTTGGCCATT
ATCGCTTACC TGTTTGTCAG GCGTGGTGTT GTGCGCGCCA TGAATATCGT GATCCACCGC
TCTAAAGTGA GTTGGGATGA TATCTTTATG AGGCATAAGG TACTGGAGAA GTTCTCCTAT
GTTGTACCAG CCCTTGTAAT GAACCTCTTG ATCCCATTGG CATTGAAAGA GCATCAACTA
ATAAGCTCAC TGGTGGATCG TCTGCTGAGT GTCTGGATTG TGGTGATGCT GGTGCGCGCT
ATCTATAGTG CACTGGATGC GGTGAATGAG ATTGCCGATG TCAATTTAGT GAGTAGGCGT
CTACCGATTA AGAGTTTTGT TCAGCTATTT AAGCTCTTCC TCTTCTTTGT AGCCATCATC
ATCTCTATTT CGGTTCTGGC GAATCAATCT CCGGTCTACT TCCTCAGCGG CTTAGGTGTT
GCGACCGGTT TGGTGATGTT AGTGTTTAGA GACACCATAT TAGGTTTTGT CGCTGGAATT
CAGCTGGCCG CTAACCGCAT GGTGAGCACG GGCGATTGGA TCCAGATGGA TAAGTATGGT
GCCAATGGCT CGGTCGTTGA GGTGTCGTTA ACCACAGTCA AGGTGCAAAA CTGGGACAAT
ACACTGACGA TGATCCCCGC CTATGCCTTG GTTTCTGATG CATTTAAGAA CTGGCGCGGT
ATGTCTGAGT CTGGTGGTCG GCGCATTAAA CGTGCGGTTT CCATCGATAT TCACAGCATA
CACTTTCTCT CTGAAGAGGA GCAGGTCAAG TTAAGTAAAA TTAACTGTTT AAAAGAGTAT
TTCTCCTCAA AAAGAGAGGA GATCTCGCTC TTTAATCAAG GTGTTGAAGA TGCTGATATG
CCGGTAAATA GTCGTCACTT GACCAATATC GGTACCTTTA GGGCGTATCT GATTGAATAT
GTGACCAGAC ACCCGCTGAT CCATAATGAT ATGACCTTGC TAGTGCGTCA ATTAGCACCA
ACATCCGAAG GTGTTCCTAT TGAGGTCTAT GTGTTTACTA CCGATATTCG CTGGAACAAT
TACGAAGATA TTCAAGGTGA TATCTTCGAT CATATCTTTG CAATCTTACC TGAGTTTGGC
TTGAAAGTTT TCCAAGGGCC AACAGGCTCA GATATTCGAA GCTTGAAGGG GGAAGTTAAG
AGTTAG
|
|---|
| Protein sequence | MDQELRLRIS KWLSDWGVNS TPSDDVSTSL LVVVSLVLAI IAYLFVRRGV VRAMNIVIHR
SKVSWDDIFM RHKVLEKFSY VVPALVMNLL IPLALKEHQL ISSLVDRLLS VWIVVMLVRA
IYSALDAVNE IADVNLVSRR LPIKSFVQLF KLFLFFVAII ISISVLANQS PVYFLSGLGV
ATGLVMLVFR DTILGFVAGI QLAANRMVST GDWIQMDKYG ANGSVVEVSL TTVKVQNWDN
TLTMIPAYAL VSDAFKNWRG MSESGGRRIK RAVSIDIHSI HFLSEEEQVK LSKINCLKEY
FSSKREEISL FNQGVEDADM PVNSRHLTNI GTFRAYLIEY VTRHPLIHND MTLLVRQLAP
TSEGVPIEVY VFTTDIRWNN YEDIQGDIFD HIFAILPEFG LKVFQGPTGS DIRSLKGEVK
S
|
|---|
| |