| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4684 |
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| Symbol | rpsC |
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| ID | 6119053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5652421 |
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| End bp | 5653110 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641636258 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_001763029 |
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| Protein GI | 170729003 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000205507 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000169741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGGACAGA AAGTACATCC TAATGGTATC CGTCTGGGTA TCACTAAGCC TTGGATCTCG
ACCTGGTACG CTGACAAGTC AGACTATGCC AATAACTTAA CTAGTGACTG GGAAGTGCGT
AAGTTTCTTG AAAAGAACCT TAAGCAAGCT TCAGTCTCTA AGATTGTTAT CGAGCGTCCA
GCAAAGAGTG TTCGCGTTAC TATTCACACT GCCCGTCCAG GTGTTGTGAT TGGTAAGAAA
GGTGAAGACG TTGAAAAGCT ACGCAACGCA GTTGCTAAGC TGACTGGTAT TCCAGCTCAA
ATCAACATCG CTGAGATCCG TAAGCCTGAG CTAGATGCAA AGCTTGTTGC CGAAGGCATC
GCTTCGCAGC TAGAGCGTCG TGTTATGTTC CGTCGTGCTA TGAAGCGCGC AGTACAAAAT
GCAATGCGTC TTGGTGCTAA AGGTATCAAA GTTGAAGTTA GCGGCCGTCT AGGCGGTGCT
GAGATTGCGC GTTCTGAGTG GTATCGTGAA GGTCGTGTAC CTTTGCATAC ACTGCGTGCT
GATATCGACT ATTCGACTGC AGAAAGTCAC ACTCAATACG GTGTGATTGG CGTCAAAGTT
TGGGTCTTCA AAGGTGAAGT TCTAGACGGC GTGCTACCTG CACACGAAGA GCCGAAACAG
CAGCCGAAGC GTAAGCCTCG CGGTAAATAG
|
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| Protein sequence | MGQKVHPNGI RLGITKPWIS TWYADKSDYA NNLTSDWEVR KFLEKNLKQA SVSKIVIERP
AKSVRVTIHT ARPGVVIGKK GEDVEKLRNA VAKLTGIPAQ INIAEIRKPE LDAKLVAEGI
ASQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARSEWYRE GRVPLHTLRA
DIDYSTAESH TQYGVIGVKV WVFKGEVLDG VLPAHEEPKQ QPKRKPRGK
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