| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4661 |
|---|
| Symbol | |
|---|
| ID | 6119030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5640722 |
|---|
| End bp | 5641468 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641636235 |
|---|
| Product | heme exporter protein CcmC |
|---|
| Protein accession | YP_001763006 |
|---|
| Protein GI | 170728980 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.727875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000192901 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAAAT GGCTACATAG TTACGCGGAT CCAGAGCGCG CTTATAATCT CTCAGGAAAA
CTTTTGCCAT GGTTCTCCAT GCTCGCAATC TCCTTGATTG GTATTGGCTC TGTGTGGGGG
CTCGCCTTCG CTCCTGTCGA TTATCAACAA GGTGACAGTT ACCGAATCAT CTTTATCCAT
GTCCCAGCTG CCTCCATGTC AATGTCAGCC TATATGGCGA TGGCAACCTC AGCATTTATC
GGCTTGGTAT GGCAGATAAA ATCAGCCGAT TGGGCAGCAG CTGCAATCGC ACCAATAGGC
GCCGTTGTCA CCTTTATCGC CCTAATCACT GGCGCTACAT GGGGCAAGCC TATGTGGGGA
ACTTGGTGGG TATGGGATGC ACGTCTAACA TCAGAACTTG TACTACTCTT CTTGTACTTA
GGTGTGATTG CTCTCTATGC TTCGTTTGAA GATAAAGTAC TTGCAGCGCG TGCAGCAGGT
ATTCTTGCAA TAGTCGGTGT AATTAACATT CCTATTATCA AATACTCTGT GGAGTGGTGG
AACTCGCTAC ATCAGCCAGC CACGATTAAG ATAACAGAGA AGTCTTCAAT GGCGGCAGAG
ATGCTATACC CATTACTAAT TAATATTCTA GGCTTTGGTC TTATGATAGG GGCTATCACC
TTGGTACGCT TCAGAGCAGA AATTCTCGCA AGAAATAGTA TGCGCCCTTG GGTAAGGGAA
CTAGCTATGA CCGAAGGAGT CAAATAA
|
|---|
| Protein sequence | MWKWLHSYAD PERAYNLSGK LLPWFSMLAI SLIGIGSVWG LAFAPVDYQQ GDSYRIIFIH
VPAASMSMSA YMAMATSAFI GLVWQIKSAD WAAAAIAPIG AVVTFIALIT GATWGKPMWG
TWWVWDARLT SELVLLFLYL GVIALYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW
NSLHQPATIK ITEKSSMAAE MLYPLLINIL GFGLMIGAIT LVRFRAEILA RNSMRPWVRE
LAMTEGVK
|
|---|
| |