| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4485 |
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| Symbol | |
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| ID | 6118841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5423402 |
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| End bp | 5424964 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641636047 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001762831 |
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| Protein GI | 170728805 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0188012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGTACTT TAGTTCGCAA TAAGACCCAA GAGGTGAAGC TACCTTGGCT AAGCTACCGC
CTATTGTGCG TGTTATGCGA ATCAGCACCA GGGATCGTCA GCCAACAGGA GTTGATTGAG
CGGATCTGGC CTGAGATAGT AGTGGGGGAT GAAACCTTAA AGCAGAGAAT TAAGCTTCTG
CGCCGTGTAT TAGATGACAA CGCGGCAGAT CCAACCTACA TAGAGGCGAT CCGTGGTCGA
GGTTACCGTC TTATCCCCCA TGTAGAGATA ACGGCGATTC CAGATCCCAG CCTCTCGGTT
AAGCTTAACC TTGCCACCGA TACTCATGTG GCCCCAGCAA ATGGCAGCAG CTATCCCCTT
TATTGGAAAG TCACCTCTCT CACTCTAGCC TTTGTGGTGA TTATTCTTGC TTGTATCGCC
CTGCTCTACT CTTCAAGCCG CACTATTCCA CAGCCGGTTT CACAAACTTT AGCCGCTAAG
ATTGCCAGTG GCTTCGATAA TGAACTCTAT GAGAATGGAC TGGATTACTA CCATAGGTAC
AGAGAGGAGG ATAACAAGCT TGCCATAGAG CTGTTTAACT CCGCCATCGA GATCAATCCC
AATATGGCCC GAGCCTATGC AGGGCTATCA GATGCCTATA GTCAGGGAAT ATTTCAGTTT
AATGGCCCCT CCGACTGGCA ACAACTGGCG ATCGATGCCG CTTACAAGGC GATTGCACTG
GATCCCAATC TGGCACAAGG CTATAAATCT CTGGGTCTGG CCTACTACAA TCGAGGCTGG
TTAACCAAGG CGATATCTGC CAACTTAAAG GCAGTACAGA AACGTAAAAA TTACAACGAG
GCCATGTCAA ACCTCGGCTT TATCTACCGA GAGATGGGGC AACTTAAACA AGCGCTTCAC
TGGATAGACA AGGCGCTAGA GGCTGACCCA AGTAACAGTG TCAGCATGCT ACATAAAGCG
CAGATTCTCT TTGCTCTCGC ACAATATCCG CAGGCCAACA TCTGGCTAGA AAAAGCACTG
CAGCTTCAGC CGGACTCTCT ACTGGCCAAT AACACTCAGG GGCAGAGTTT GCTACAACAG
GGGCTATTTC TCCAAGCTAA AGCCCACTAT CAGGAGTTAA TTGCACGTTA CCCAAAGCAG
TTAGTGTTTA TCGAGGGACT CGCCAATGCT CTGCTCTATT TAGGTGAAGA GGAGCAGGCA
AGAGAGTTGG CAAAACAGCT CATTCAATCA GATAACCGAC AGGTAAAAGT TCGAGGCGAG
CTACTGAGTT ACTTAGCCAA TGAGCAGGGT ACACAGGCGC AATTAGCCCA CCTTGAGCAA
AGGTTTAAAC AGGAACTTGC CCTAGGCTCA GACAGACCCA GCGACAGCAT GTCACTGGCT
CGCCTTTACG CCAAGAGTCA GGCAAATGAT AAAAGCTATC GCTATCTTAT ACAGGCGATA
AACCAAGGTT GGTTAGCAAG GAACCTAGTG ATCATGGATC CTAGCTTTAA AGCAATAAAA
GAGGAGGTAA GCTTTAATCA GCTCATTGAT GAGATGGATA ATCAGAGGAC GAGGCAACAA
TAA
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| Protein sequence | MGTLVRNKTQ EVKLPWLSYR LLCVLCESAP GIVSQQELIE RIWPEIVVGD ETLKQRIKLL
RRVLDDNAAD PTYIEAIRGR GYRLIPHVEI TAIPDPSLSV KLNLATDTHV APANGSSYPL
YWKVTSLTLA FVVIILACIA LLYSSSRTIP QPVSQTLAAK IASGFDNELY ENGLDYYHRY
REEDNKLAIE LFNSAIEINP NMARAYAGLS DAYSQGIFQF NGPSDWQQLA IDAAYKAIAL
DPNLAQGYKS LGLAYYNRGW LTKAISANLK AVQKRKNYNE AMSNLGFIYR EMGQLKQALH
WIDKALEADP SNSVSMLHKA QILFALAQYP QANIWLEKAL QLQPDSLLAN NTQGQSLLQQ
GLFLQAKAHY QELIARYPKQ LVFIEGLANA LLYLGEEEQA RELAKQLIQS DNRQVKVRGE
LLSYLANEQG TQAQLAHLEQ RFKQELALGS DRPSDSMSLA RLYAKSQAND KSYRYLIQAI
NQGWLARNLV IMDPSFKAIK EEVSFNQLID EMDNQRTRQQ
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