| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4401 |
|---|
| Symbol | |
|---|
| ID | 6118756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5333564 |
|---|
| End bp | 5334460 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635963 |
|---|
| Product | rod shape-determining protein MreC |
|---|
| Protein accession | YP_001762748 |
|---|
| Protein GI | 170728722 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1792] Cell shape-determining protein |
|---|
| TIGRFAM ID | [TIGR00219] rod shape-determining protein MreC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00873954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCA TTTTTGCTCG TGGTATTTCA AACCAATTCA GGCTGACACT GGCAATTATT
TTGTCGGTGA TCCTTATCGT GGCGAACAAT CGTCTCGATC CTGTGCGTAA ATCTGTCTCA
TCTGTATTAA GCCCCCTGCA ATATATTGCT AACGTTCCCG GTGCACTCTT AGATTGGTCT
GCAGAGAGTT TAGCGACCCG CAATATGCTT GCTCAGCAAA ATAAAGAGCT GCTTAGACAG
CAACTATTGA TGAGTGAAAG ATTACAAAGA TTCGAACACC TAAGGCAGGA GAATGATCGT
CTACGATCTT TACTAGGATC GCCAGTGCAT ATGGATGCTA AGAAGATTGT TGCCGAGGTG
ATGGAGGTTG CCAGCGATCC TTTTCACCAA TATGTGGTGC TAAACCATGG TGCAAGAAGT
GGTGTTTTTG TCGGTCAACC TGTGGTTGAT GCTCAGGGTG TGGTTGGACA GGTTGTGCAG
GTGAGTGAAC TCAGTAGTCG CGTACTGCTG ATATCAGATG TGACCCATGC TATTCCTGTC
AGAGTGACAC GTAACGATGT CAGAGTTGTG GCTAATGGAA CAGGTGTACT CGATGAGCTT
GAGCTCAAGT ATGTCTCTAA GAGTACAGAT ATTCGTGTTG GCGATCTTCT GGTCTCCTCA
GGCCTTGGAA ATCGATTCCC TGAAGGTTAC CCCGTAGCCC GTGTAATGAG CTTAGTGAAA
GATGACGGTC AGAATTACGC AAATGTGATC GCTCAGCCGT TAGCTGCGTT GGATCGTATT
CGTTATCTTC TGTTGATATG GCCAGATGAG CCCGCATCTG AGGCGTTAGA AGATGAAACG
GCAATGATCT TATCTGCGGC AAAAAAGGCG GCAGAAAAAG CTGAGGTGGG CGAATGA
|
|---|
| Protein sequence | MKPIFARGIS NQFRLTLAII LSVILIVANN RLDPVRKSVS SVLSPLQYIA NVPGALLDWS
AESLATRNML AQQNKELLRQ QLLMSERLQR FEHLRQENDR LRSLLGSPVH MDAKKIVAEV
MEVASDPFHQ YVVLNHGARS GVFVGQPVVD AQGVVGQVVQ VSELSSRVLL ISDVTHAIPV
RVTRNDVRVV ANGTGVLDEL ELKYVSKSTD IRVGDLLVSS GLGNRFPEGY PVARVMSLVK
DDGQNYANVI AQPLAALDRI RYLLLIWPDE PASEALEDET AMILSAAKKA AEKAEVGE
|
|---|
| |